57105e3e6e8c590537fedcc559cb0fac2812d56d
lrnassar
  Thu Feb 22 14:33:24 2024 -0800
Staging the ENIGMA tracks, refs #32919

diff --git src/hg/makeDb/trackDb/human/trackDb.enigmaTracks.ra src/hg/makeDb/trackDb/human/trackDb.enigmaTracks.ra
new file mode 100644
index 0000000..3227b77
--- /dev/null
+++ src/hg/makeDb/trackDb/human/trackDb.enigmaTracks.ra
@@ -0,0 +1,60 @@
+track enigma
+superTrack on
+group phenDis
+shortLabel ENIGMA BRCA1/BRCA2 specs 1.1.0
+longLabel ENIGMA BRCA1/BRCA2 Panel Specifications of ACMG/AMP Guidelines version 1.1.0
+pennantIcon New red ../goldenPath/newsarch.html#XXXXXX "New Xxx. XX, XXX"
+
+track BRCAclinDomains
+shortLabel BRCA1/BRCA2 protein domains 1.1.0
+longLabel BRCA1/BRCA2 ENIGMA clinically relevant protein domains (ENIGMA specs version 1.1.0)
+superTrack enigma hide
+priority 1
+type bigBed 9 + 4
+itemRgb on
+mouseOverField _mouseOver
+bigDataUrl /gbdb/$D/bbi/enigma/BRCAclinDomains.bb
+noScoreFilter on
+
+track BRCAexonWeights
+shortLabel BRCA1/BRCA2 exon weights 1.1.0
+longLabel BRCA1/BRCA2 exon-specific weights for PM5_PTC code (ENIGMA specs version 1.1.0)
+superTrack enigma hide
+priority 2
+type bigBed 8 + 15
+mouseOverField _mouseOver
+bigDataUrl /gbdb/$D/bbi/enigma/BRCAexonWeights.bb
+noScoreFilter on
+
+track BRCAfunctionalAssays
+shortLabel BRCA1/BRCA2 functional assays 1.1.0
+longLabel BRCA1/BRCA2 reviewed functional assays for PS3 and BS3 codes (ENIGMA specs version 1.1.0)
+superTrack enigma hide
+priority 3
+type bigBed 9 + 15
+itemRgb on
+mouseOverField _mouseOver
+bigDataUrl /gbdb/$D/bbi/enigma/BRCAfunctionalAssays.bb
+noScoreFilter on
+
+track BRCAsplicing
+shortLabel BRCA1/BRCA2 splicing 1.1.0
+longLabel BRCA1/BRCA2 variant codes according to PVS1 decision trees (ENIGMA specs version 1.1.0)
+superTrack enigma hide
+priority 4
+type bigBed 9 + 9
+itemRgb on
+mouseOverField _mouseOver
+bigDataUrl /gbdb/$D/bbi/enigma/BRCAsplicing.bb
+noScoreFilter on
+
+track BRCAmla
+shortLabel BRCA1/BRCA2 likelihood for PP4 and BP5
+longLabel BRCA1/BRCA2 multifactorial likelihood analysis for PP4 and BP5 ACMG codes (Parsons et al. 2019)
+superTrack enigma hide
+priority 5
+type bigBed 9 + 67
+itemRgb on
+mouseOverField _mouseOver
+bigDataUrl /gbdb/$D/bbi/enigma/BRCAmfa.bb
+noScoreFilter on