3f5d580335f671dc10964ec9e5b549cb3cb9c367 max Tue Mar 26 06:36:26 2024 -0700 adding view chrom sizes menu entry and improving the seq view page a little, refs #25796 diff --git src/hg/hgTracks/menu.c src/hg/hgTracks/menu.c index 5cb42fc..f4e974a 100644 --- src/hg/hgTracks/menu.c +++ src/hg/hgTracks/menu.c @@ -259,30 +259,33 @@ dyStringCannibalize(&menuItemDs)); if (stringIn(exportedDataHubsMenuItemId, menuStr)) jsOnEventById("click", exportedDataHubsMenuItemId, "showExportedDataHubsPopup(); return false;"); } // Create top items in view menu safef(buf, sizeof(buf), "../cgi-bin/hgTracks?%s&hgt.psOutput=on", uiVars); appendLink(&links, buf, "PDF", "pdfLink", FALSE); safef(buf, sizeof(buf), "%s&o=%d&g=getDna&i=mixed&c=%s&l=%d&r=%d&db=%s&%s", hgcNameAndSettings(), winStart, chromName, winStart, winEnd, database, uiVars); //appendLink(&links, buf, "DNA", "dnaLink", FALSE); appendLinkWithShortcut(&links, buf, "DNA", "dnaLink", "Show DNA sequence in view", "v d", FALSE, FALSE); safef(buf, sizeof(buf), "../cgi-bin/hgConvert?hgsid=%s&db=%s", cartSessionId(cart), database); appendLink(&links, buf, "In Other Genomes (Convert)", "convertMenuLink", FALSE); +safef(buf, sizeof(buf), "../cgi-bin/hgTracks?chromInfoPage=&hgsid=%s&db=%s", cartSessionId(cart), database); +appendLinkWithShortcut(&links, buf, "Chromosome Sizes", "showSizesLink", "Show a table of all chromsomes in this assembly (or scaffolds/contigs) and their sizes.", "v s", FALSE, FALSE); + // add the sendTo menu if (fileExists("extTools.ra")) { appendLinkWithOnclick(&links, "#", "In External Tools", "extToolLink", "Show current sequence on a third-party website", "showExtToolDialog(); return false;", "s t", FALSE, FALSE); } // Add link-outs to other dbs as appropriate for this assembly if (differentWord(database,"susScr2")) { /* Print Ensembl anchor for latest assembly of organisms we have * supported by Ensembl == if versionString from trackVersion exists */ struct trackVersion *trackVersion = getTrackVersion(database, "ensGene"); if ((conn != NULL) && sqlTableExists(conn, UCSC_TO_ENSEMBL))