1942abfbe86d5b3f5ed3ad0482a31a9354587e18
max
  Tue Mar 26 09:30:03 2024 -0700
preparing clinvar for somatic mutations, no ticket yet

diff --git src/hg/utils/otto/clinvar/clinvar.as src/hg/utils/otto/clinvar/clinvar.as
index d66aeb9..9ab1e80 100644
--- src/hg/utils/otto/clinvar/clinvar.as
+++ src/hg/utils/otto/clinvar/clinvar.as
@@ -23,23 +23,26 @@
     string nsvId;         "dbVar ID"
     lstring rcvAcc;         "ClinVar Allele Submission"
     string testedInGtr;         "Genetic Testing Registry"
     lstring phenotypeList;         "Phenotypes"
     lstring phenotype;         "Phenotype identifiers"
     string origin;         "Allele origin"
     string assembly;         "Genome assembly"
     string cytogenetic;         "Cytogenetic status"
     lstring _jsonHgvsTable;         "HGVS names"
     lstring _hgvsProt;         "Protein HGVS"
     string numSubmit;         "Number of submitters"
     string lastEval;         "Last evaluation"
     string guidelines;         "Guidelines"
     lstring otherIds;         "Other identifiers (ClinGen, OMIM, etc.)"
     lstring _mouseOver;        "Mouse over text"
+    string vcfDesc;            "VCF position|Can differ from ClinVar position due to left/right shifting rules"
+    string somImpactDesc;       "Somatic Impact"
+    string oncogenDesc;       "Oncogen"
     string _clinSignCode;        "Clinical Significance"
     string _originCode;        "Allele Origin Code"
     string _allTypeCode;        "Variation Type"
     uint _varLen;            "Variant Length in base pairs"
     uint _starCount;         "Number of stars"
     int _variantId;           "ClinVar variant ID"
     string _dbVarSsvId;           "dbVar SSV ID"
     )