8ccceea1c52492b6a869af8de3190a387d4b6550
braney
  Tue Mar 12 13:41:09 2024 -0700
added exportedDataHubs dialog and code to deal with quickLifted hubs

diff --git src/hg/inc/quickLift.h src/hg/inc/quickLift.h
new file mode 100644
index 0000000..20e75de
--- /dev/null
+++ src/hg/inc/quickLift.h
@@ -0,0 +1,19 @@
+/* quickLift genome annotations on the fly between assemblies using chain files */
+
+/* Copyright (C) 2023 The Regents of the University of California 
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
+
+#ifndef QUICKLIFT_H      
+#define QUICKLIFT_H      
+
+struct bigBedInterval *quickLiftIntervals(char *instaPortFile, struct bbiFile *bbi,   char *chrom, int start, int end, struct hash **pChainHash);
+/* Return intervals from "other" species that will map to the current window.
+ * These intervals are NOT YET MAPPED to the current assembly.
+ */
+
+struct bed *quickLiftBed(struct bbiFile *bbi, struct hash *chainHash, struct bigBedInterval *bb);
+/* Using chains stored in chainHash, port a bigBedInterval from another assembly to a bed
+ * on the reference.
+ */
+
+#endif