9cf7baf4bc2d17ad036d295fd96f137235915775 markd Fri Mar 15 10:57:07 2024 -0700 removed stale FIXME diff --git src/utils/bamToPsl/tests/makefile src/utils/bamToPsl/tests/makefile index 4982637..724174a 100644 --- src/utils/bamToPsl/tests/makefile +++ src/utils/bamToPsl/tests/makefile @@ -1,27 +1,26 @@ kentSrc = ../../.. include ../../../inc/common.mk PROG = bamToPsl test: test1 test2 test1: mkout ${PROG} input/chr9.NM_020469.2.blat.bam output/$@.psl diff expected/$@.psl output/$@.psl -# FIXME: pslCheck call is disable as this produces invalid PSLs. test2: mkout ${PROG} -nohead input/multimap.sam -fasta=output/$@.fa output/$@.psl diff expected/$@.psl output/$@.psl diff expected/$@.fa output/$@.fa pslCheck -verbose=0 -querySizes=input/multimap.qsizes output/$@.psl mkout: @mkdir -p output clean: rm -rf output ## # chr9.NM_020469.2.blat.bam: #