716d66bcce087e3ab5cc3d6b74cebd7cb8d72e6d max Wed Mar 13 09:20:16 2024 -0700 docing bigBedMaxItems, refs #33023 diff --git src/product/ex.hg.conf src/product/ex.hg.conf index 46a38ff..d0675b0 100644 --- src/product/ex.hg.conf +++ src/product/ex.hg.conf @@ -61,30 +61,36 @@ # if you want a different default species selection on the Gateway # page, change this default Human to one of the genomes from the # defaultDb table in hgcentral: # hgsql -e "select genome from defaultDb;" hgcentral # If you need a different version of that specific genome, change # the defaultDb table entry, for example, a different mouse genome # version as default: # hgsql -e 'update defaultDb set name="mm8" where genome="Mouse" # then this defaultGenome would read: defaultGenome=Mouse # defaultGenome=Human # tracks display width has a default maximum width of 5000 pixels # override that limit with a larger number for maxDisplayPixelWidth # maxDisplayPixelWidth=5000 +# +# The maximum number of features that can be read from a bigBed file. +# This limits the time spent on loading a bigBed track. In coverage mode, +# in theory the user can display millions of features, but loading these +# can take too much time. +#bigBedMaxItems=10000 # trackDb table to use. A simple value of `trackDb' is normally sufficient. # In general, the value is a comma-separated list of trackDb format tables to # search. This supports local tracks combined with a mirror of the trackDb # table from UCSC. The names should be in the form `trackDb_suffix'. This # implies a parallel hgFindSpec format search table exists in the form # hgFindSpec_suffix. The specified trackDb tables are searched in the order # specified, with the first occurrence of a track being used. You may associate # trackDb/hgFindSpec tables with other instances of genome databases using a # specification of dbProfile:trackDbTbl, where dbProfile is the name of a # databases profile in hg.conf, and trackDbTbl is the name of the table in the # remote databases. See below for details of dbProfile # db.trackDb=trackDb #db.trackDb=trackDb_local,trackDb