33ed38114541f79c21d4257f7b489c7e50a5906b lrnassar Tue Apr 16 13:48:36 2024 -0700 Adding two intro pages to git which has existed in the RR for a long time. I didn't want to delete it in case it was referenced elsewhere. refs #33444 diff --git src/hg/htdocs/indexIntro.html src/hg/htdocs/indexIntro.html new file mode 100644 index 0000000..39700ef --- /dev/null +++ src/hg/htdocs/indexIntro.html @@ -0,0 +1,114 @@ +<!-- Introduction ============================================ --> + <TABLE style="background-color:#888888; width: 100%; border-width: 0px; border-spacing: 0px; padding: 0px"> + <TR><TD> + <TABLE style="background-color:#fffee8; width: 100%; border-width: 0px; border-spacing: 0px; padding: 0px"> + <TR><TD> + + <TABLE style="background-color:#D9E4F8; background-image: url('images/hr.gif'); width: 100%;"><TR><TD> + <A NAME="About"></A><FONT SIZE="4"><B> About the UCSC Genome Bioinformatics Site</B></FONT> + </TD></TR></TABLE> + + <TABLE style="background-color:#fffee8; width: 100%; padding: 0px"><TR><TD> + <TR><TH HEIGHT=3></TH></TR> + <TR><TD WIDTH=10></TD><TD> + + <P> + Welcome to the UCSC Genome Browser website. + This site contains the + reference sequence and working draft + assemblies for a large collection of genomes. It also + provides portals to + <A HREF="ENCODE/">ENCODE</A> data at UCSC (2003 to 2012) and to the + <A HREF="Neandertal">Neandertal</A> project. + You may download or purchase the Genome Browser source code, or the + Genome Browser in a Box + (<a href="goldenPath/help/gbib.html">GBiB</a>) + at our + <a href="https://genome-store.ucsc.edu" target="_blank">online store</a>. + </P> + +<!--#if expr='"$SERVER_NAME" = /hgwdev.*.ucsc.edu/ || "$SERVER_NAME" = /genome-test.*.ucsc.edu/'--> +<P> +<B>WARNING: This is a test server.</B> +Data and tools on this website are under +construction, have not been reviewed for quality, and are subject to change +at any time. +For +high-quality, reviewed annotations on our production server, visit +<A HREF="http://genome.ucsc.edu">http://genome.ucsc.edu</A>.</P> +<!--#endif --> + +<!--#if expr='"$SERVER_NAME" = /genome-preview.*.ucsc.edu/' --> +<P> +<B>WARNING: This is our preview site.</B> +This website is a weekly mirror of our internal +development server for public access. +Data and tools on this site are under +Construction, have not been reviewed for quality, and are subject to change +at any time. We provide this site for early access, with the warning that it is +less available and stable than our public site. For +high-quality, reviewed annotations on our production server, visit +<A HREF="http://genome.ucsc.edu">http://genome.ucsc.edu</A>.</P> +<!--#endif --> + + <P> + We encourage you to explore these sequences with our tools. + The + <A HREF="cgi-bin/hgTracks?org=human">Genome + Browser</A> zooms and scrolls over chromosomes, + showing the work of annotators worldwide. The + <A HREF="cgi-bin/hgNear?org=human">Gene + Sorter</A> + shows expression, homology and other information on groups + of genes that can be related in many ways. + <A HREF="cgi-bin/hgBlat?org=human">Blat</A> + quickly maps your sequence to the genome. The + <A HREF="cgi-bin/hgTables?org=human">Table + Browser</A> provides convenient access to the underlying + database. + <A HREF="cgi-bin/hgVisiGene?org=human">VisiGene</A> + lets you browse through a large + collection of <em>in situ</em> mouse and frog images to + examine expression patterns. + <A HREF="cgi-bin/hgGenome?org=human">Genome + Graphs</A> allows you to + upload and display genome-wide data sets.</P> + <P> + The UCSC Genome Browser is developed and maintained by the + Genome Bioinformatics Group, + a cross-departmental team within the <a href="http://genomics.soe.ucsc.edu/" + target="_blank">UC Santa Cruz Genomics Institute</a> + at the University of California Santa Cruz + (<A HREF="http://www.ucsc.edu/public/" + TARGET=_blank>UCSC</A>). + If you have feedback or questions concerning the tools or + data on this website, feel free to contact us on our + <A HREF="contacts.html">public mailing list</A>. The + Genome Browser is for research use only. Not intended for + clinical use. </P> + + <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> + <TR><TD ALIGN="left"> + The Genome Browser project team relies on public funding to support our + work. Donations are welcome -- we have many more ideas than our funding + supports! If <em>you</em> have ideas, drop a comment in our + <a href="../cgi-bin/hgUserSuggestion">suggestion box</a>. + </TD> + <TD ALIGN="right"> + <a href="https://securelb.imodules.com/s/1069/index.aspx?sid=1069&gid=1&pgid=761&dids=645&" + target="_blank"><img + src="/images/donateNow.jpg" title="Give to the UCSC Genome Browser" + alt="Give to the UCSC Genome Browser" width="100"></a> + </TD></TR></TABLE> + +<!-- <p> + <a href="https://securelb.imodules.com/s/1069/index.aspx?sid=1069&gid=1&pgid=761&dids=645&" + target="_blank"><img + src="/images/donateNow.jpg" title="Give to the UCSC + Genome Browser" width="150"></a> + </p> +--> + </TD><TD WIDTH=15> + </TD></TR></TABLE> + <BR></TD></TR></TABLE> + </TD></TR></TABLE>