db93d1ac9ffd179e8e70e2c98999c98fbb9efd5d
markd
  Wed Apr 17 21:12:30 2024 -0700
added missing or outdated ENCODE files from the rr

diff --git src/hg/htdocs/ENCODE/index.html src/hg/htdocs/ENCODE/index.html
old mode 100644
new mode 100755
index 3f98673..635bce4
--- src/hg/htdocs/ENCODE/index.html
+++ src/hg/htdocs/ENCODE/index.html
@@ -103,31 +103,31 @@
 (<a href="http://www.genome.gov/" target="_blank">NHGRI</a>).
 The goal of ENCODE is to build a comprehensive parts list of functional elements in the 
 human genome, including elements that act at the protein and RNA levels, and regulatory 
 elements that control cells and circumstances in which a gene is active.</p>
 
 <p>
 <b><em>ENCODE results from 2007 and later are available from the 
 ENCODE Project Portal</em></b>,
 <a href="https://encodeproject.org" target=_blank>encodeproject.org</a>.
 This covers data generated during the two production phases 2007-2012
 and 2013-present. The ENCODE Project Portal also hosts additional
 ENCODE access tools, and ENCODE project pages including up-to-date information 
 about data releases, publications, and upcoming tutorials.</b>
 </p>
 
-<!--#if expr='"$SERVER_NAME" = /hgwdev.*.soe.ucsc.edu/ || "$SERVER_NAME" = "genome-test.soe.ucsc.edu"'-->
+<!--#if expr='"$SERVER_NAME" = /hgwdev.*.cse.ucsc.edu/ || "$SERVER_NAME" = "genome-test.cse.ucsc.edu"'-->
 <p>
 <b>WARNING: This is a test site.</b>
 Data and tools here are under construction, have not been quality reviewed, and are subject 
 to change at any time.
 For high-quality reviewed annotations on the UCSC production server, visit
 <a HREF="http://genome.ucsc.edu/ENCODE">http://genome.ucsc.edu/ENCODE</a>.</p>
 <!--#endif -->
 
 <p>
 UCSC coordinated data for the ENCODE Consortium from its inception in 2003 (Pilot phase) 
 to the end of the first 5 year phase of whole-genome data production in 2012.  
 All data produced by ENCODE investigators and the results of ENCODE analysis projects 
 from this period are hosted in the UCSC Genome browser and database.
 Explore ENCODE data using the image links below or via the left menu bar.
 <b><em>All ENCODE data at UCSC are freely available for download and analysis</em></b>.</p>