db93d1ac9ffd179e8e70e2c98999c98fbb9efd5d markd Wed Apr 17 21:12:30 2024 -0700 added missing or outdated ENCODE files from the rr diff --git src/hg/htdocs/ENCODE/news_archive.html src/hg/htdocs/ENCODE/news_archive.html index 84b64f6..1800097 100755 --- src/hg/htdocs/ENCODE/news_archive.html +++ src/hg/htdocs/ENCODE/news_archive.html @@ -79,31 +79,31 @@ <TD nowrap><FONT color="#006666"><B>Group</B></FONT></TD> <TD nowrap><FONT color="#006666"><B>Super-tracks</B></FONT></TD> <TD nowrap><FONT color="#006666"><B>Tracks</B></FONT></TD> <TD nowrap><FONT color="#006666"><B>Tables</B></FONT></TD> </TR> <TR><TD>Regions and Genes</TD><TD>2</TD><TD>12</TD><TD>73</TD></TR> <TR><TD>Transcription</TD><TD>2</TD><TD>11</TD><TD>67</TD></TR> <TR><TD>Chromatin Immunoprecipitation</TD><TD>8</TD><TD>28</TD><TD>349</TD></TR> <TR><TD>Chromatin Structure</TD><TD>2</TD><TD>8</TD><TD>51</TD></TR> </TABLE></P> <P> Note that the Variation and Comparative Genomics data were not lifted during this migration; instead, they will be replaced by new data. The first ENCODE MSA alignment for hg18 (TBA) is currently in progress on the UCSC - <A HREF="http://hgwdev.soe.ucsc.edu/ENCODE/">development + <A HREF="http://hgwdev.cse.ucsc.edu/ENCODE/">development server</A>. <P> During the migration, ENCODE tracks with whole-genome data were moved into the standard browser track groups. These include the GIS PET and UCSD/LI TAF1 tracks. Future submissions of whole-genome ENCODE data will be loaded directly into the standard track groups. </P> <P> We have expanded the ENCODE downloads site to include original data for all "wiggle" datasets. These data files now have filename extensions indicating the wiggle input format (fixed step, variable step, or bedGraph).</P> <P>