180a1b4affe6539979535d59eab358cae53dccd2 max Thu Apr 18 04:38:13 2024 -0700 fixing uniprot docs 2, thanks to @markd diff --git src/hg/makeDb/trackDb/uniprot.html src/hg/makeDb/trackDb/uniprot.html index 1bdc451..60671eb 100644 --- src/hg/makeDb/trackDb/uniprot.html +++ src/hg/makeDb/trackDb/uniprot.html @@ -109,32 +109,36 @@ Extracellular Domains, Transmembrane Domains, and Cytoplamsic domains subtracks.</p> <p> Mouse over a feature to see the full UniProt annotation comment. For variants, the mouse over will show the full name of the UniProt disease acronym. </p> <p> The subtracks for domains related to subcellular location are sorted from outside to inside of the cell: <span style="color: rgb(255,0,150)"><b>Signal peptide</b></span>, <span style="color: rgb(0,150,255)"><b>extracellular</b></span>, <span style="color: rgb(0,150,0)"> <b>transmembrane</b></span>, and <span style="color: rgb(255,150,0)"><b>cytoplasmic</b></span>. </p> <p> -Features in the "UniProt Modifications" track are drawn in - <span style="color: rgb(200,200,0)"><b>light green</b></span>.</p> +Features in the "UniProt Modifications" (modified residues) track are drawn in + <span style="color: rgb(200,200,0)"><b>light green</b></span>. Disulfide bonds are shown in + <span style="color: rgb(100,100,100)"><b>dark grey</b></span>. Topological domains + in <span style="color: rgb(100,0,0)"><b>maroon</b></span> and zinc finger regions in + <span style="color: rgb(100,100,0)"><b>olive green</b></span>. +</p> <p> Duplicate annotations are removed as far as possible: if a TrEMBL annotation has the same genome position and same feature type, comment, disease and mutated amino acids as a SwissProt annotation, it is not shown again. Two annotations mapped through different protein sequence alignments but with the same genome coordinates are only shown once. </p> <p>On the configuration page of this track, you can choose to hide any TrEMBL annotations. This filter will also hide the UniProt alternative isoform protein sequences because both types of information are less relevant to most users. Please contact us if you want more detailed filtering features.</p> <p>Note that for the human hg38 assembly and SwissProt annotations, there also is a <a