2b5f10644f8fc336b6f73c10967edee119f8e8f3 gperez2 Mon Apr 1 17:42:56 2024 -0700 Code review edits, refs #33313 diff --git src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html index 06588c7..30fb62e 100755 --- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html +++ src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html @@ -186,31 +186,31 @@ http://genome.ucsc.edu/s/ExampleUser/TrackHubSession</a></li> </ul> <p>For additional information, see <a href="hgSessionHelp.html#HowToShare">sharing Saved Sessions </a> and <a href="hgSessionHelp.html#Create"> backing up custom data</a>.</p> <a name="hubUrl"></a> <h3>Creating a URL for a Track Hub</h3> <p>Hubs can be loaded into the URL using the <code>hubUrl=</code> parameter. This parameter takes input similar to the <a href="../cgi-bin/hgHubConnect#unlistedHubs">track hub input box</a>. Native UCSC supported genomes can be loaded into the URL using the <code>db=</code> parameter while -non-natively supported genomes such as assembly hubs or genArk hubs use the <code>genome=</code> +non-natively supported genomes such as assembly hubs or GenArk hubs use the <code>genome=</code> parameter. URL parameters can be combined by using <code>&</code>. </p> <p>The following example links to the hg19 genome database and an example track hub using the <code>db=</code> and the <code>hubUrl=</code> parameters:</p> <pre><a href=../cgi-bin/hgTracks?db=hg19&hubUrl=https://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hub.txt>http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&hubUrl=https://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hub.txt</a></pre> <p>Track hubs' track visibility can also be changed from the URL parameters. As an example, the following link specifies: <ul> <li> the genome database (db=hg38)</li> <li> loads a track hub (hubUrl=http://hgdownload.soe.ucsc.edu/hubs/gtex/hub.txt)</li> <li> hides all tracks (hideTracks=1)</li> <li> hides the subtrack kids of a particular track (gtexRnaSignalMaleYoung_hideKids=1)</li> <li> sets a specific subtrack to be displayed (gtexRnaSignalSRR1311243=full)</li> <li> ignores user settings (ignoreCookie=1).</p></li> </ul>