c18e69d83c6e7c80bae078cc840389a88e7eafc5 jcasper Thu Apr 4 11:40:26 2024 -0700 Correcting minor typos for knownGeneV45, refs #32414 diff --git src/hg/makeDb/doc/ucscGenes/hg38.gencodeV45.sh src/hg/makeDb/doc/ucscGenes/hg38.gencodeV45.sh index 7228638..dd6f7d2 100644 --- src/hg/makeDb/doc/ucscGenes/hg38.gencodeV45.sh +++ src/hg/makeDb/doc/ucscGenes/hg38.gencodeV45.sh @@ -1,18 +1,18 @@ export db=hg38 -export GENCODE_VERSION=V44 -export PREV_GENCODE_VERSION=V43 +export GENCODE_VERSION=V45 +export PREV_GENCODE_VERSION=V44 screen -S knownGene${GENCODE_VERSION} mkdir /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build cd /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build PATH=$HOME/kent/src/hg/utils/otto/knownGene":$PATH" cp /hive/data/genomes/${db}/bed/gencode${PREV_GENCODE_VERSION}/build/buildEnv.sh buildEnv.sh # edit buildEnv.sh . buildEnv.sh # NB: Had to manually construct the files.txt file; it was missing. cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.files.txt . cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.tables.txt . hgsql ${oldKnownDb} -Ne "show tables" > ${oldKnownDb}.tables.txt diff <(sort ${PREV_GENCODE_VERSION}.tables.txt) <(sort ${oldKnownDb}.tables.txt)