1f8eb9eed9dc2b3541cc190331541757d183281f markd Sat Apr 13 09:23:37 2024 -0700 combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827 diff --git src/hg/makeDb/trackDb/mgcGenes.html src/hg/makeDb/trackDb/mgcGenes.html deleted file mode 100644 index a10e05f..0000000 --- src/hg/makeDb/trackDb/mgcGenes.html +++ /dev/null @@ -1,49 +0,0 @@ -

Description

-

-This track shows alignments of $organism mRNAs from the -Mammalian Gene Collection -(MGC) having full-length open reading frames (ORFs) to the genome. -The goal of the Mammalian Gene Collection is to provide researchers with -unrestricted access to sequence-validated full-length protein-coding cDNA -clones for human, mouse, and rat genes. -

- -

Display Conventions and Configuration

-

-The track follows the display conventions for -gene prediction -tracks.

-

-An optional codon coloring feature is available for quick -validation and comparison of gene predictions. -To display codon colors, select the genomic codons option from the -Color track by codons pull-down menu. Click -here for more -information about this feature.

- -

Methods

-

-GenBank $organism MGC mRNAs identified as having full-length ORFs -were aligned against the genome using blat. When a single mRNA -aligned in multiple places, the alignment having the highest base identity was -found. Only alignments having a base identity level within 1% of -the best and at least 95% base identity with the genomic sequence -were kept.

- -

Credits

-

-The $organism MGC full-length mRNA track was produced at UCSC from -mRNA sequence data submitted to -GenBank by the -Mammalian Gene Collection project.

- -

References

-

-Mammalian Gene Collection project references.

-

-Kent WJ. -BLAT - the BLAST-like alignment tool. -Genome Res. 2002 Apr;12(4):656-64.