1f8eb9eed9dc2b3541cc190331541757d183281f
markd
  Sat Apr 13 09:23:37 2024 -0700
combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827

diff --git src/hg/makeDb/trackDb/mgcGenes.html src/hg/makeDb/trackDb/mgcGenes.html
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-<H2>Description</H2>
-<P>
-This track shows alignments of $organism mRNAs from the
-<A HREF="http://mgc.nci.nih.gov/" TARGET=_blank>Mammalian Gene Collection</A> 
-(MGC) having full-length open reading frames (ORFs) to the genome. 
-The goal of the Mammalian Gene Collection is to provide researchers with
-unrestricted access to sequence-validated full-length protein-coding cDNA
-clones for human, mouse, and rat genes.
-</P>
-
-<H2>Display Conventions and Configuration</H2>
-<P>
-The track follows the display conventions for 
-<A HREF="../goldenPath/help/hgTracksHelp.html#GeneDisplay">gene prediction 
-tracks</A>.  </P>
-<P>
-An optional codon coloring feature is available for quick
-validation and comparison of gene predictions.
-To display codon colors, select the <em>genomic codons</em> option from the
-<em>Color track by codons</em> pull-down menu. Click 
-<A HREF="../goldenPath/help/hgCodonColoring.html">here</A> for more 
-information about this feature. </P>
-
-<H2>Methods</H2>
-<P>
-GenBank $organism MGC mRNAs identified as having full-length ORFs 
-were aligned against the genome using blat. When a single mRNA 
-aligned in multiple places, the alignment having the highest base identity was
-found.  Only alignments having a base identity level within 1% of
-the best and at least 95% base identity with the genomic sequence 
-were kept.</P>
-
-<H2>Credits</H2>
-<P>
-The $organism MGC full-length mRNA track was produced at UCSC from 
-mRNA sequence data submitted to 
-<A HREF="https://www.ncbi.nlm.nih.gov/Genbank/index.html" 
-TARGET=_blank>GenBank</A> by the 
-<A HREF="http://mgc.nci.nih.gov/" TARGET=_blank>Mammalian Gene Collection</A> project.</P>
-
-<H2>References</H2> 
-<P>
-Mammalian Gene Collection project <A HREF="http://mgc.nci.nih.gov/Info/References" 
-TARGET=_blank>references</A>.</P>
-<P>
-Kent WJ.
-<A HREF="http://www.genome.org/cgi/content/abstract/12/4/656" 
-target="_blank">BLAT - the BLAST-like alignment tool</A>.
-<em>Genome Res.</em> 2002 Apr;12(4):656-64.</P>