1f8eb9eed9dc2b3541cc190331541757d183281f markd Sat Apr 13 09:23:37 2024 -0700 combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827 diff --git src/hg/makeDb/trackDb/orfeomeGenes.html src/hg/makeDb/trackDb/orfeomeGenes.html deleted file mode 100644 index 5512b08..0000000 --- src/hg/makeDb/trackDb/orfeomeGenes.html +++ /dev/null @@ -1,34 +0,0 @@ -<H2>Description</H2> -<P> -This track shows alignments of $organism clones from the -<A HREF="http://www.orfeomecollaboration.org/" -TARGET=_blank>ORFeome Collaboration</A>. The project goal is to be an -"unrestricted source of fully sequence-validated full-ORF human cDNA -clones in a format allowing easy transfer of the ORF sequences into -virtually any type of expression vector. A major goal is to provide -at least one fully sequenced full-ORF clone for each human gene." -This track is updated automatically as new clones become available. -</P> - -<H2>Display Conventions and Configuration</H2> -<P> -The track follows the display conventions for -<A HREF="../goldenPath/help/hgTracksHelp.html#GeneDisplay">gene prediction -tracks</A>. </P> - -<H2>Methods</H2> -<P> -ORFeome $organism clones were obtained from GenBank and aligned against the -genome using the blat program. When a single clone aligned in multiple -places, -the alignment having the highest base identity was found. Only alignments -having a base identity level within 0.5% of the best and at least 96% base -identity with the genomic sequence were kept. -</P> - -<H2>Credits and references</H2> -<P> -Visit the ORFeome Collaboration -<A HREF="http://www.orfeomecollaboration.org/html/orfCollOverview.shtml" -TARGET=_blank>members page</A> for a list of credits and references. -</P>