1f8eb9eed9dc2b3541cc190331541757d183281f
markd
  Sat Apr 13 09:23:37 2024 -0700
combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827

diff --git src/hg/makeDb/trackDb/trackDb.genbank.ra src/hg/makeDb/trackDb/trackDb.genbank.ra
index 1e7b32a..beff0b1 100644
--- src/hg/makeDb/trackDb/trackDb.genbank.ra
+++ src/hg/makeDb/trackDb/trackDb.genbank.ra
@@ -116,47 +116,30 @@
 spectrum on
 type psl xeno
 baseColorUseSequence genbank
 indelDoubleInsert on
 indelQueryInsert on
 url https://www.ncbi.nlm.nih.gov/htbin-post/Entrez/query?form=4&db=n&term=$$
 
 track xenoRefGene
 shortLabel Other RefSeq
 longLabel Non-$Organism RefSeq Genes
 group genes
 visibility dense
 color 12,12,120
 type genePred xenoRefPep xenoRefMrna
 
-track mgcFullMrna
-shortLabel MGC Genes
-longLabel Mammalian Gene Collection Full ORF mRNAs
-group genes
-visibility hide
-color 0,100,0
-type psl
-baseColorDefault diffCodons
-baseColorUseCds genbank
-baseColorUseSequence genbank
-indelDoubleInsert on
-indelQueryInsert on
-showDiffBasesAllScales .
-showDiffBasesMaxZoom 10000.0
-showCdsAllScales .
-showCdsMaxZoom 10000.0
-
 searchName refGeneAcc
 searchTable refGene
 searchMethod exact
 searchType genePred
 semiShortCircuit 1
 termRegex N(M|R)_[0-9]{6}[0-9]*
 searchPriority 9.5
 
 searchName mrnaAcc
 searchTable all_mrna
 searchMethod prefix
 searchType mrnaAcc
 shortCircuit 1
 semiShortCircuit 1
 termRegex [a-z][a-z0-9][0-9]+
@@ -167,36 +150,52 @@
 searchType refGene
 searchPriority 2
 grepIndex genbankGrep/refLink.mrnaAccProduct
 
 searchTable xenoRefGene
 searchType refGene
 searchPriority 2.1
 grepIndex refLinkGrep/refLink.mrnaAccProduct
 
 searchName mrnaKeyword
 searchTable all_mrna
 searchType mrnaKeyword
 searchPriority 15
 grepIndex genbankGrep
 
+track mgcFullMrna
+shortLabel MGC Genes
+longLabel Mammalian Gene Collection Full ORF mRNAs
+group genes
+visibility hide
+color 0,100,0
+type psl
+baseColorDefault diffCodons
+baseColorUseCds genbank
+baseColorUseSequence genbank
+indelDoubleInsert on
+indelQueryInsert on
+showDiffBasesAllScales .
+showDiffBasesMaxZoom 10000.0
+showCdsAllScales .
+showCdsMaxZoom 10000.0
+
 searchTable mgcFullMrna
 searchType psl
 searchPriority 25
 semiShortCircuit 1
 
-# keep adjacent to MGC
 track orfeomeMrna
 shortLabel ORFeome Clones
 longLabel ORFeome Collaboration Gene Clones
 group genes
 visibility hide
 color 34,139,34
 type psl
 baseColorDefault diffCodons
 baseColorUseCds genbank
 baseColorUseSequence genbank
 indelDoubleInsert on
 indelQueryInsert on
 showDiffBasesAllScales .
 showDiffBasesMaxZoom 10000.0
 showCdsAllScales .