1f8eb9eed9dc2b3541cc190331541757d183281f
markd
  Sat Apr 13 09:23:37 2024 -0700
combined MGC and ORFeome into a super track on hg38, hg19, and mm10. RM 13827

diff --git src/hg/makeDb/trackDb/mgcFullMrna.html src/hg/makeDb/trackDb/mgcFullMrna.html
index 13fffdb..aff20c4 100644
--- src/hg/makeDb/trackDb/mgcFullMrna.html
+++ src/hg/makeDb/trackDb/mgcFullMrna.html
@@ -1,64 +1,64 @@
 <h2>Description</h2>
 
 <p>
-This track shows alignments of $organism mRNAs from the
+This track show alignments of $organism mRNAs from the
 <a href="https://genecollections.nci.nih.gov/MGC/" target="_blank">Mammalian Gene Collection</a>
 (MGC) having full-length open reading frames (ORFs) to the genome.
 The goal of the Mammalian Gene Collection is to provide researchers with
 unrestricted access to sequence-validated full-length protein-coding cDNA
-clones for human, mouse, and rat genes.
+clones for human, mouse, rat, xenopus, and zerbrafish genes.
 </p>
 
 <h2>Display Conventions and Configuration</h2>
 
 <p>
 The track follows the display conventions for
 <a href="/goldenPath/help/hgTracksHelp.html#GeneDisplay" target="_blank">gene prediction
 tracks</a>.
 </p>
 
 <p>
 An optional codon coloring feature is available for quick
 validation and comparison of gene predictions.
 To display codon colors, select the <em>genomic codons</em> option from the
 <em>Color track by codons</em> pull-down menu. For more information
 about this feature, go to the
 <a href="/goldenPath/help/hgCodonColoring.html" target="_blank">
 Coloring Gene Predictions and Annotations by Codon</a> page.
 </p>
 
 <h2>Methods</h2>
 
 <p>
 GenBank $organism MGC mRNAs identified as having full-length ORFs
 were aligned against the genome using blat. When a single mRNA
 aligned in multiple places, the alignment having the highest base identity was
 found.  Only alignments having a base identity level within 1% of
 the best and at least 95% base identity with the genomic sequence
 were kept.
 </p>
 
 <h2>Credits</h2>
 
 <p>
 The $organism MGC full-length mRNA track was produced at UCSC from
 mRNA sequence data submitted to
 <a href="https://www.ncbi.nlm.nih.gov/genbank/" target="_blank">
 GenBank</a> by the Mammalian Gene Collection project.
 </p>
 
 <h2>References</h2>
 
 <p>
 Mammalian Gene Collection project
 <a href="https://genecollections.nci.nih.gov/MGC/Info/References" target="_blank">references</a>.
 </p>
 
 <p>
 Kent WJ.
 <a href="https://genome.cshlp.org/content/12/4/656.full" target="_blank">
 BLAT--the BLAST-like alignment tool</a>.
 <em>Genome Res</em>. 2002 Apr;12(4):656-64.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11932250" target="_blank">11932250</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC187518/" target="_blank">PMC187518</a>
 </p>