d88300025cbc54935141d132c49336b8d7768ac7 jnavarr5 Mon May 6 16:09:04 2024 -0700 Adding a table of contents to the Custom Track help page. Moving all examples to the bottom of the page. Adding summarys to some steps. Reorganizing text to be in a more digestable manor. Fixing broken links to the file formats page. Making all titles sentence case, refs #19736 diff --git src/hg/htdocs/goldenPath/help/customTrack.html src/hg/htdocs/goldenPath/help/customTrack.html index 8327d48..e08e905 100755 --- src/hg/htdocs/goldenPath/help/customTrack.html +++ src/hg/htdocs/goldenPath/help/customTrack.html @@ -1,37 +1,40 @@

Displaying Your Own Annotations in the Genome Browser

What are custom annotation tracks?

Building and sharing a custom track
Example #1: Simple annotation file
Example #2: Two annotations track in one file
Example #3a: BED example with multiple blocks
Example #3b: Simple annotation in bigBed format
Example #4: URL substitution using the 'name' field

Loading a custom track into the Genome Browser
Displaying and managing custom tracks

Creating Browser lines for annotations
Creating browser lines for annotations
Additional browser line options
Defining track lines for annotations
Required and useful track attribute pairs

Sharing your annotation track with others

Example #5: Loading a custom track via the URL
Example #6: Constructing a URL using the bigDataUrl setting

Troubleshooting annotation display problems

Custom Track Examples:

Simple annotation file
Two annotations track in one file
BED custom track with multiple blocks
Simple annotation in bigBed format
Create external links using the 'name' field from the BED file
Loading a custom track via the URL
Construct a sharable URL using the bigDataUrl setting

Displaying Your Own Annotations in the Genome Browser

Table of Contents

Custom Track Examples: