Commits for hiram

v465_preview to v465_preview2 (2024-04-29 to 2024-05-06) v465

ff4e923294201861dc037c70229a73b50e3c2cbc Wed May 1 21:29:23 2024 -0700

• reworking the phastCons and phyloP tracks
  • src/hg/makeDb/doc/hg38/multiz470way.txt - lines changed 308, context: html, text, full: html, text

973d987f021ce8ae4fbaa555f2f7ee611c341a10 Thu May 2 10:19:09 2024 -0700

• separate out the syn rbest and liftOver chains into their own view
  • src/hg/utils/automation/asmHubChainNetTrackDb.pl - lines changed 37, context: html, text, full: html, text

4687e86792555ca063ea6d90d67adb7d583551d6 Thu May 2 11:45:57 2024 -0700

• now with correct common name
  • src/hg/utils/automation/asmHubChainNetTrackDb.pl - lines changed 70, context: html, text, full: html, text

9eb381beb58a8f827bb0664bdcb8c643144fe7bd Thu May 2 12:32:49 2024 -0700

• the net tracks are not nets they are alignments
  • src/hg/utils/automation/asmHubChainNetTrackDb.pl - lines changed 16, context: html, text, full: html, text

2df46316a4bbb699e3c24bf57485b216e3c32af4 Fri May 3 12:06:07 2024 -0700

• making liftOver big files for track
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 13, context: html, text, full: html, text

9904896e7b27b2bf0bd0d55377bf3aa1aa7c3ffb Fri May 3 12:06:42 2024 -0700

• improved description and now with table of feature bits identity
  • src/hg/utils/automation/asmHubChainNetComposite.pl - lines changed 114, context: html, text, full: html, text

819c30d6d5b5e898158949bb88d89026bd30bdf6 Fri May 3 15:53:04 2024 -0700

• initial version of a feature bits table
  • src/hg/utils/automation/featBitsSurvey.pl - lines changed 84, context: html, text, full: html, text