f68839c12f3e1ad0fa4223d71782c1e2f509d10b
lrnassar
  Wed May 29 15:43:23 2024 -0700
Bringing in and releases the SpliceAI data from the hub Jeltje made, refs #27141

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 3de33cc..7e4faa1 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -5678,15 +5678,31 @@
 priority 10000
 type genePred
 shortLabel RefSeq Historical
 longLabel NCBI RefSeq Historical Transcript Versions
 color 12,12,120
 idXref ncbiRefSeqLinkHistorical mrnaAcc name
 baseColorUseCds given
 baseColorDefault genomicCodons
 
 searchTable ncbiRefSeqHistorical
 searchMethod exact
 searchType genePred
 semiShortCircuit 1
 termRegex [N][MR]_[0-9]{6}[0-9]*\.[0-9]+
 searchPriority 20
+
+track spliceAI
+shortLabel SpliceAI
+longLabel SpliceAI: Splice Variant Prediction Score
+type bigBed 9 +
+group phenDis
+bigDataUrl /gbdb/$D/bbi/spliceAi.bb
+visibility hide
+itemRgb on
+noScoreFilter on
+filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss
+filterLabel.spliceType Splice type
+filter.AIscore 0.02
+filterLimits.AIscore 0.02:1
+mouseOver <b>Change:</b> $name<br><b>Gene:</b> $gene<br><b>Type of change:</b>$spliceType<br><b>Affected splice location:</b> $relativePos<br><b>Score:</b> $AIscore
+pennantIcon New red ../goldenPath/newsarch.html#053024 "May 30, 2024"