b31907d700c1fe956e4e4c20e64d91de027d7c84 markd Tue May 14 02:03:33 2024 -0700 merge blatHuge implementation diff --git src/blat/test/throwback/test.psl src/blat/test/throwback/test.psl new file mode 100644 index 0000000..fa35e42 --- /dev/null +++ src/blat/test/throwback/test.psl @@ -0,0 +1,8 @@ +psLayout version 3 + +match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts + match match count bases count bases name size start end name size start end count +--------------------------------------------------------------------------------------------------------------------------------------------------------------- +2041 4 0 0 4 4 6 15587 - A530054K11 2050 1 2050 /cluster/data/mm4/nib/chr13.nib:65483152-65612585 129433 28251 45883 11 130,453,51,426,47,31,529,9,97,127,145, 0,131,585,637,1063,1110,1141,1671,1680,1777,1904, 28251,28381,28834,28885,29315,29363,29395,29924,31552,32120,45738, +1943 87 0 0 3 9 4 51763 - A530054K11 2050 3 2042 /cluster/data/mm4/nib/chr13.nib:65483152-65612585 129433 75640 129433 7 122,449,56,1040,93,127,143, 8,130,580,637,1684,1777,1904, 75640,76181,76630,76686,79119,79680,129290, +1865 131 0 0 4 41 4 15461 - A530054K11 2050 5 2042 /cluster/data/mm4/nib/chr13.nib:65483152-65612585 129433 300 17757 8 121,453,53,1012,93,127,100,37, 8,129,583,637,1684,1777,1904,2008, 300,672,1125,1178,3513,4943,17620,17720,