b31907d700c1fe956e4e4c20e64d91de027d7c84
markd
  Tue May 14 02:03:33 2024 -0700
merge blatHuge implementation

diff --git src/blat/version.doc src/blat/version.doc
index c4eb896..eea682c 100644
--- src/blat/version.doc
+++ src/blat/version.doc
@@ -1,15 +1,19 @@
+39:
+     o (in 38x1) Add blatHuge and gfServerHuge which support genome assemblies greater than
+       four gigabases.  These are separate programs and gfServerHuge must be used to build
+       dynamic indexes.
 38:
      o (in 37x1) Added Dynamic BLAT using virtual memory mapped precreated indexes on disk.
        This allows gfServer to be launched on-demand by xinetd.
 
 37:
      o (in 36x1) Fixed problem with -fastMap option that made it put in gaps in the
        allignment sometimes when a short mismatch would be a better choice.
      o (in 36x2) Fixed problem with -maxIntron set to non-default value on protein query.
      o (in 36x3) Added ipv6 support.
      o (in 36x4) Added _alt support.
      o (in 36x5) If ipv6 disabled, retries with ipv4-only socket.
      o (in 36x6) Added noSimpRepMask option to blat gfServer isPcr to skip simple repeat masking.
      o (in 36x7) Fixed compiler optimization issue on mac 2020-06-17 in dlSort().
      o (in 36x8) Added -timeout option to prevent hanging on blocking input for server read and write.
      o (in 36x9) Changed default -timeout to 90 seconds instead of 10. Improved handling skips further sending on socket after failure to avoid multiple long timeouts.