b31907d700c1fe956e4e4c20e64d91de027d7c84 markd Tue May 14 02:03:33 2024 -0700 merge blatHuge implementation diff --git src/gfServer/tests/expected/testHugeProt.psl src/gfServer/tests/expected/testHugeProt.psl new file mode 100644 index 0000000..982aac7 --- /dev/null +++ src/gfServer/tests/expected/testHugeProt.psl @@ -0,0 +1,11 @@ +78 24 0 0 1 247 1 247769 ++ XM_044058998.1_prot 898 150 499 NC_056744.1 1842211721 1273156765 1273404840 2 68,34, 150,465, 1273156765,1273404738, +25 6 0 0 0 0 0 0 ++ XM_044058998.1_prot 898 468 499 NC_056745.1 1569859801 778306355 778306448 1 31, 468, 778306355, +25 6 0 0 0 0 0 0 ++ XM_044058998.1_prot 898 468 499 NC_056745.1 1569859801 834851589 834851682 1 31, 468, 834851589, +47 21 0 0 0 0 0 0 ++ XM_044058998.1_prot 898 150 218 NC_056745.1 1569859801 850011442 850011646 1 68, 150, 850011442, +884 0 0 0 2 2 20 825495 ++ XM_044058998.1_prot 898 12 898 NC_056751.1 836063838 387199297 388027444 21 52,24,28,34,68,28,58,72,61,27,32,33,33,33,30,45,62,46,39,34,45, 12,64,88,116,150,218,246,304,376,438,465,497,530,563,596,626,671,734,780,819,853, 387199297,387316426,387371604,387416919,387468025,387520464,387546720,387559769,387585916,387674699,387677866,387689567,387722127,387741792,387779898,387887328,387902723,387976542,387993251,388004375,388027309, +143 21 0 0 2 187 2 729450 +- XM_044058998.1_prot 898 148 499 NC_056745.1 1569859801 478338755 479068697 3 70,60,34, 148,377,465, 1090791104,1091294999,1091520944, +434 1 0 0 1 11 8 322196 ++ XM_044059790.1_prot 446 0 446 NC_056751.1 836063838 388107417 388430918 9 18,58,44,38,31,37,91,20,98, 0,18,76,120,158,189,237,328,348, 388107417,388167478,388220248,388248341,388257619,388310324,388322761,388364622,388430624, +31 10 0 0 0 0 0 0 ++ XM_044059397.1_prot 825 394 435 NC_056735.1 2000000000 865544668 865544791 1 41, 394, 865544668, +796 0 0 0 1 22 20 715787 ++ XM_044059397.1_prot 825 7 825 NC_056751.1 836063838 388673194 389391369 21 83,30,29,33,33,50,47,30,40,38,43,43,35,32,64,23,27,28,20,28,40, 7,90,120,149,182,215,265,312,342,382,420,463,506,541,573,637,660,687,737,757,785, 388673194,388731583,388756649,388795483,388878898,388906974,388965697,388995469,389003402,389037993,389068690,389095840,389118789,389167280,389194792,389206641,389207102,389293314,389340306,389384278,389391249, +40 1 0 0 0 0 0 0 +- XM_044059397.1_prot 825 422 463 NC_056750.1 882488833 345372788 345372911 1 41, 422, 537115922, +21 0 0 0 0 0 0 0 +- XM_044059397.1_prot 825 442 463 NC_056750.1 882488833 345372301 345372364 1 21, 442, 537116469,