3f6eb7eb31edcf73fc79707baeda85cf70e52992
markd
  Wed May 15 08:12:10 2024 -0700
re-import fixed version of GENCODE V46lift37 gene symbol table from EBI

diff --git src/hg/makeDb/doc/hg19.gencode.txt src/hg/makeDb/doc/hg19.gencode.txt
index fbc70a2..cb9d3b1 100644
--- src/hg/makeDb/doc/hg19.gencode.txt
+++ src/hg/makeDb/doc/hg19.gencode.txt
@@ -1306,16 +1306,22 @@
     # to describe new release.
 
     jkmake DBS=hg19
 
     # edit  all.joiner to add ~/tmp/gencodeV46lift37.joiner
     # verify with:
     pushd /hive/data/genomes/hg19/bed/gencodeV46lift37/hgcImport${pre}
     make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
       These two complaint are cause by the new PAR id scheme causing a chrY
       V19 copy to be brought in are now fixed by filter and input time.
 
     # commit all
     jkmake alpha DBS=hg19
 
+2024-05-15 - EBI got a fixed version of gencode.v46lift37.metadata.HGNC.gz,
+which will also have all symbols mapped to HGNC ids.
+
+download 
+  https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_46/GRCh37_mapping/gencode.v46lift37.metadata.HGNC.gz
+to data/release_46lift37/ and rerun the make
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