8541001ae3a49443eea4234a2f4a32e274dd9b44 markd Mon May 13 12:00:41 2024 -0700 import of final release of gencode V46 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 7fafcbb..8446b91 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -20,32 +20,32 @@ host=$(shell hostname) ppid=$(shell echo $$PPID) tmpExt = ${host}.${ppid}.tmp SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## -#preRelease = no -preRelease = yes +preRelease = no +#preRelease = yes db = hg38 #db = hg19 #db = mm39 ifeq (${db},mm10) # mm10 lift back was never revewed and released grcRefAssembly = GRCm38 verBase = M25 prevVer = M24 backmapTargetVer = M25 ver = ${verBase}lift37 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${verBase}/GRCm38_mapping annGffTypeName = chr_patch_hapl_scaff.annotation isBackmap = yes else ifeq (${db},mm39)