c631d4d20178d19ed60da27cd7e34d63872d4a90
markd
  Thu May 16 10:34:45 2024 -0700
added pslSpliceJunctions to gather information in splice junctions to use in comprative mapping analysis

diff --git src/utils/pslSpliceJunctions/tests/input/rna-hg38.psl src/utils/pslSpliceJunctions/tests/input/rna-hg38.psl
new file mode 100644
index 0000000..e1cf619
--- /dev/null
+++ src/utils/pslSpliceJunctions/tests/input/rna-hg38.psl
@@ -0,0 +1,3 @@
+6192	0	348	0	0	0	16	272411	+	NM_001172766.3	6540	0	6540	chr7	159345973	114414814	114693765	17	546,178,90,138,201,175,214,105,88,84,202,77,102,122,70,164,3984,	0,546,724,814,952,1153,1328,1542,1647,1735,1819,2021,2098,2200,2322,2392,2556,	114414814,114426501,114534616,114628539,114629804,114631530,114642409,114644684,114652202,114653925,114658065,114659355,114659571,114662064,114663449,114664272,114689781,
+5504	0	797	0	0	0	5	26857	-	NM_001244583.2	6301	0	6301	chr7	159345973	115935151	115968309	6	5780,148,76,57,115,125,	0,5780,5928,6004,6061,6176,	115935151,115941892,115950873,115954585,115956678,115968184,
+2416	256	0	0	36	1662	42	15000	+	mm_NM_011041.3	4334	0	4334	chr14	107043718	36661696	36679368	50	249,11,10,60,478,7,119,142,260,92,236,69,14,5,76,17,6,13,6,13,21,49,43,12,5,47,17,12,5,15,71,11,28,54,13,10,17,59,40,17,30,11,7,8,28,7,4,41,5,102,	0,259,271,334,394,889,903,1022,1164,1481,1616,1870,1939,1984,1991,2067,2084,2094,2134,2140,2155,2185,2240,2295,2307,2314,2412,2440,2455,2493,2515,2624,2638,2670,2725,2740,2854,3321,3380,3431,3534,3614,3709,3716,3724,3752,4158,4163,4227,4232,	36661696,36661952,36661967,36662033,36662896,36663394,36663405,36666459,36676197,36676524,36676653,36676901,36676974,36677015,36677020,36677097,36677121,36677136,36677179,36677188,36677202,36677234,36677290,36677341,36677355,36677360,36677457,36677488,36677500,36677513,36677534,36677641,36677652,36677685,36677739,36677752,36677864,36678313,36678374,36678419,36678519,36678628,36678726,36678735,36678746,36678775,36679200,36679204,36679260,36679266,