b31907d700c1fe956e4e4c20e64d91de027d7c84
markd
  Tue May 14 02:03:33 2024 -0700
merge blatHuge implementation

diff --git .gitignore .gitignore
index b060988..9e89feb 100644
--- .gitignore
+++ .gitignore
@@ -1,69 +1,69 @@
 *.o
 *.a
-.gitignore
 *~
 foo
 *.foo
 *.exe
 *.bak
 core
 core.*
 *.pyc
 *.pyo
 tags
 src/htslib/version.h
 *.gcno
 
 .emacs.bak/
 src/hg/pslCDnaFilter/algo.msg
 src/hg/pslCDnaFilter/usage.msg
 
 compiled/
 
 # for those that build kent/bin/
 /bin
 
 # build droppings
 src/hg/hgGateway/hgGateway.html.h
 src/hg/hgPhyloPlace/phyloPlace
 src/isPcr/webPcr/webPcr
 src/utils/pslMap/usage.msg
 src/webBlat/webBlat
 
 # test results
 **/tests/output/
+**/test/output/
 src/lib/tests/bin/
 
 # other tests output follow conventions
 src/hg/autoDtd/test/chado/out.atree
 src/hg/autoDtd/test/chado/out.dtd
 src/hg/autoDtd/test/chado/out.stats
 src/hg/autoDtd/test/chado/out.tree
 src/hg/autoDtd/test/hotnews/out.atree
 src/hg/autoDtd/test/hotnews/out.dtd
 src/hg/autoDtd/test/hotnews/out.stats
 src/hg/autoDtd/test/hotnews/out.tree
 src/hg/autoDtd/test/shapes/out.atree
 src/hg/autoDtd/test/shapes/out.dtd
 src/hg/autoDtd/test/shapes/out.stats
 src/hg/autoDtd/test/shapes/out.tree
 src/hg/cgilib/tests/bin/
 src/hg/cgilib/tests/udcCache/
 src/hg/liftAcross/tests/testErr.out
 src/hg/liftAcross/tests/testOut.bed
 src/hg/liftAcross/tests/testOutput.gp
 src/hg/sqlToXml/test/visiGeneXml/out.xml
 src/hg/utils/bedMergeAdjacent/tests/output.bed
 src/hg/utils/overlapSelect/usage.msg
 src/utils/bedGeneParts/firstCodingSplice.out
 src/utils/bedGeneParts/firstExon.out
 src/utils/bedGeneParts/introns.out
 src/utils/bedGeneParts/promoter.out
 src/utils/clusterMatrixToBarChartBed/tests/test.output
 src/utils/cpgIslandExt/tests/testOutput.bed.gz
 src/utils/matrixMarketToTsv/tests/out.tsv
 src/utils/pslRemoveFrameShifts/tests/out/
 src/utils/pslScore/tests/NP_149062.tab
 src/utils/pslScore/tests/NP_149062Pl.tab
 src/utils/trackDbIndexBb/tests/out/