b31907d700c1fe956e4e4c20e64d91de027d7c84 markd Tue May 14 02:03:33 2024 -0700 merge blatHuge implementation diff --git src/blat/test/basic/refFine.psl src/blat/test/basic/refFine.psl new file mode 100644 index 0000000..14970c3 --- /dev/null +++ src/blat/test/basic/refFine.psl @@ -0,0 +1,6 @@ +psLayout version 3 + +match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts + match match count bases count bases name size start end name size start end count +--------------------------------------------------------------------------------------------------------------------------------------------------------------- +1531 0 0 0 0 0 8 3802 + hCreaMrna 1540 0 1531 hCreaGeno 6896 240 5573 9 312,199,96,222,86,124,135,126,231, 0,312,511,607,829,915,1039,1174,1300, 240,1156,1558,2040,2391,2592,4377,5013,5342,