c631d4d20178d19ed60da27cd7e34d63872d4a90
markd
  Thu May 16 10:34:45 2024 -0700
added pslSpliceJunctions to gather information in splice junctions to use in comprative mapping analysis

diff --git src/utils/pslSpliceJunctions/tests/makefile src/utils/pslSpliceJunctions/tests/makefile
new file mode 100644
index 0000000..4e240d2
--- /dev/null
+++ src/utils/pslSpliceJunctions/tests/makefile
@@ -0,0 +1,21 @@
+kentSrc = ../../..
+include ${kentSrc}/inc/common.mk
+
+pslSpliceJunctions = ${DESTBINDIR}/pslSpliceJunctions
+hg38twobit = /hive/data/genomes/hg38/hg38.2bit
+
+all:
+
+test:: rnahg38Test
+
+
+rnahg38Test: mkdirs
+	${pslSpliceJunctions} input/rna-hg38.psl ${hg38twobit} output/$@.tsv
+	diff -u expected/$@.tsv output/$@.tsv
+
+
+mkdirs:
+	@mkdir -p output
+
+clean:
+	rm -rf output