b39ad84412ed9a69cfcd7ae9ca05384cb17e40e9 gperez2 Sat May 25 08:03:25 2024 -0700 Removing repetition of text, refs #33080 #33083 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 87093f0..6909a8f 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -64,32 +64,31 @@ <a name="2024"></a> <a name="052224"></a> <h2>May. 22, 2024 New GENCODE "KnownGene" V46 for human (hg38) and VM35 for mouse (mm39)</h2> <p> We are pleased to announce the release of the <a href="/cgi-bin/hgTrackUi?db=hg38&g=knownGene&c=chrX">GENCODE V46 (hg38)</a> and the <a href="/cgi-bin/hgTrackUi?db=mm39&g=knownGene&c=chrX">GENCODE VM35 (mm39)</a> gene tracks. The GENCODE "KnownGene" V46 and VM35 gene tracks were built using a UCSC pipeline (KnownGene) and the GENCODE comprehensive gene set to generate high-quality manual annotations merged with evidence-based automated annotations. The GENCODE "KnownGene" tracks are our default gene tracks, which have extensive associations to external sources. This allows for additional metadata on every item as well as external links. The track description pages contain options for configuring the display, such as showing non-coding genes, splice variants, and -pseudogenes. The track description pages for these tracks contain options for configuring the -display such as also showing non-coding genes, splice variants, and pseudogenes.</p> +pseudogenes.</p> <p> Below is a summary of the contents found in each release. For more details visit the <a target="_blank" href="https://www.gencodegenes.org/">GENCODE site</a>.</p> <p> <table class="stdTbl"> <tr><th COLSPAN=4>GENCODE v46 Release Stats</th></tr> <tr align=left><th>Genes</th><th>Observed</th><th>Transcripts</th><th>Observed</th></tr> <tr align=left><td>Protein-coding genes</td><td>19,411</td><td>Protein-coding transcripts</td><td>89,581</td></tr> <tr align=left><td>Long non-coding RNA genes</td><td>20,310</td><td><font size="-1">- full length protein-coding</font></td><td>64,695</td></tr> <tr align=left><td>Small non-coding RNA genes</td><td>7,565</td><td><font size="-1">- partial length protein-coding</font></td><td>24,886</td></tr> <tr align=left><td>Pseudogenes</td><td>14,716</td><td>Nonsense mediated decay transcripts</td><td>21,774</td></tr> <tr align=left><td>Immunoglobulin/T-cell receptor gene segments</td><td>648</td><td>Long non-coding RNA loci transcripts</td><td>59,927</td></tr> <tr align=left><td>Total No of distinct translations</td><td>65,650</td><td>Genes that have more than one distinct translations</td><td>13,620</td></tr> </table><BR> @@ -855,32 +854,31 @@ Lou Nassar, Max Haeussler, and Gerardo Perez for their efforts on this release.</p> <a name="090723"></a> <h2>Sep. 07, 2023 New GENCODE "KnownGene" V44 for human (hg38) and VM33 for mouse (mm39)</h2> <p> We are pleased to announce the release of the <a href="/cgi-bin/hgTrackUi?db=hg38&g=knownGene&c=chrX">GENCODE V44 (hg38)</a> and the <a href="/cgi-bin/hgTrackUi?db=mm39&g=knownGene&c=chrX">GENCODE VM33 (mm39)</a> gene tracks. The GENCODE "KnownGene" V44 for hg38 and VM33 gene tracks were built using a UCSC pipeline (KnownGene) and the GENCODE comprehensive gene set to generate high-quality manual annotations merged with evidence-based automated annotations. The GENCODE "KnownGene" tracks are our default gene tracks, which have extensive associations to external sources. This allows for additional metadata on every item as well as external links. The track description pages contain options for configuring the display, such as showing non-coding genes, splice variants, and -pseudogenes. The track description pages for these tracks contain options for configuring the -display such as also showing non-coding genes, splice variants, and pseudogenes.</p> +pseudogenes.</p> <p> Below is a summary of the contents found in each release. For more details visit the <a target="_blank" href="https://www.gencodegenes.org/">GENCODE site</a>.</p> <p> <table class="stdTbl"> <tr><th COLSPAN=4>GENCODE v44 Release Stats</th></tr> <tr align=left><th>Genes</th><th>Observed</th><th>Transcripts</th><th>Observed</th></tr> <tr align=left><td>Protein-coding genes</td><td>19,396</td><td>Protein-coding transcripts</td><td>89,067</td></tr> <tr align=left><td>Long non-coding RNA genes</td><td>19,922</td><td><font size="-1">- full length protein-coding</font></td><td>63,968</td></tr> <tr align=left><td>Small non-coding RNA genes</td><td>7,566</td><td><font size="-1">- partial length protein-coding</font></td><td>25,099</td></tr> <tr align=left><td>Pseudogenes</td><td>14,735</td><td>Nonsense mediated decay transcripts</td><td>21,384</td></tr> <tr align=left><td>Immunoglobulin/T-cell receptor gene segments</td><td>647</td><td>Long non-coding RNA loci transcripts</td><td>58,246</td></tr> <tr align=left><td>Total No of distinct translations</td><td>65,342</td><td>Genes that have more than one distinct translations</td><td>13,594</td></tr> </table><BR>