e55d5d49dfead30ba3c279307ed460f25d729d0a gperez2 Fri May 24 14:48:39 2024 -0700 Fixing broken links, No redmine diff --git src/hg/makeDb/trackDb/human/omimAvSnp.html src/hg/makeDb/trackDb/human/omimAvSnp.html index 2590246..f37fcd6 100644 --- src/hg/makeDb/trackDb/human/omimAvSnp.html +++ src/hg/makeDb/trackDb/human/omimAvSnp.html @@ -1,32 +1,32 @@ <H2>Description</H2> <!--#insert file="omimDescriptionText.html"--> <P> This track shows the <B>allelic variants</B> in the Online Mendelian Inheritance in Man (<A HREF="https://www.omim.org/" TARGET=_blank>OMIM</A>) database that have associated -<A HREF="https://www.ncbi.nlm.nih.gov/projects/SNP/" TARGET=_blank>dbSNP</A> identifiers. +<A HREF="https://www.ncbi.nlm.nih.gov/snp/" TARGET=_blank>dbSNP</A> identifiers. </P> <H2>Display Conventions and Configuration</H2> <P>Genomic positions of OMIM allelic variants are marked by solid blocks, which appear as tick marks when zoomed out. <P> The details page for each variant displays the allelic variant description, the amino acid replacement, and the associated -<a href="https://www.ncbi.nlm.nih.gov/projects/SNP/" target="_blank">dbSNP</a> and/or +<a href="https://www.ncbi.nlm.nih.gov/snp/" target="_blank">dbSNP</a> and/or <a href="https://www.ncbi.nlm.nih.gov/clinvar/" target="_blank">ClinVar</a> identifiers with links to the variant's details at those resources. </P> <P>The descriptions of OMIM entries are shown on the main browser display when Full display mode is chosen. In Pack mode, the descriptions are shown when mousing over each entry. </P> <H2>Methods</H2> <P> This track was constructed as follows: <UL> <LI>The OMIM allelic variant data file <TT>mimAV.txt</TT> was obtained from OMIM and loaded into the MySQL table <TT>omimAv</TT>. <LI>The genomic position for each allelic variant in <TT>omimAv</TT> with an associated dbSnp identifier was obtained from the <TT>snp151</TT> table. The OMIM AV identifiers and