27a61987f2692b2fad37a9faada47b927f568e1e hiram Fri May 24 10:11:44 2024 -0700 correct ftp to https for references to ftp.ncbi.nih.gov no redmine diff --git src/hg/utils/automation/asmHubHtml.pl src/hg/utils/automation/asmHubHtml.pl index 5a27bc8..7a36cf7 100755 --- src/hg/utils/automation/asmHubHtml.pl +++ src/hg/utils/automation/asmHubHtml.pl @@ -87,21 +87,21 @@ printf "<td>%s</td>", $asmDate; printf "<td><a href='' class='hgGateway' hubTxt='%s/%s' asmId='%s_%s' target='_blank'>%s</a></td>", $hubLink, $hubText, $asmAccession, $asmName, $commonName; printf "<td>%s</td>", $sciName; if ($bioSample ne "(n/a)") { printf "<td><a href=\"https://www.ncbi.nlm.nih.gov/biosample/?term=%s\" target=\"_blank\"> %s</a></td>", $bioSample, $bioSample; } else { printf "<td>(n/a)</td>"; } printf "<td align=\"right\">%s</td>", &AsmHub::commify($contigCount); printf "<td align=\"right\">%s</td>", &AsmHub::commify($genomeSize); printf "<td align=\"right\">%s</td>", &AsmHub::commify($n50); printf "<td align=\"right\">%% %.2f</td>", $gcContent; printf "<td align=\"right\">%s<br>%% %.2f</td>", &AsmHub::commify($gapsN), $NperCent; printf "<td align=\"right\">%s<br>%s<br>%% %.2f</td>", &AsmHub::commify($geneCount), &AsmHub::commify($geneBasesCovered), $genePercentCoverage; printf "<td><a href=\"https://www.ncbi.nlm.nih.gov/assembly/%s\" target=\"_blank\">%s</a></td>", $asmAccession, $asmAccession; - printf "<td><a href=\"ftp://ftp.ncbi.nlm.nih.gov/%s\" target=\"_blank\">%s</a></td>", $ftpName, $asmName; + printf "<td><a href=\"https://ftp.ncbi.nlm.nih.gov/%s\" target=\"_blank\">%s</a></td>", $ftpName, $asmName; printf "<td>%s</td>", $asmType; printf "<td>%s</td>", $asmLevel; printf "<td>%s</td></tr>\n", $submitter; } close (FH);