27a61987f2692b2fad37a9faada47b927f568e1e
hiram
  Fri May 24 10:11:44 2024 -0700
correct ftp to https for references to ftp.ncbi.nih.gov no redmine

diff --git src/hg/utils/automation/asmHubNcbiGene.pl src/hg/utils/automation/asmHubNcbiGene.pl
index 5eeb224..deb55c4 100755
--- src/hg/utils/automation/asmHubNcbiGene.pl
+++ src/hg/utils/automation/asmHubNcbiGene.pl
@@ -60,45 +60,45 @@
 my $assemblyDate = `grep -v "^#" $namesFile | cut -f9`;
 chomp $assemblyDate;
 my $ncbiAssemblyId = `grep -v "^#" $namesFile | cut -f10`;
 chomp $ncbiAssemblyId;
 my $organism = `grep -v "^#" $namesFile | cut -f5`;
 chomp $organism;
 
 if ( "${asmType}" eq "refseq" ) {
 
 print <<_EOF_
 <h2>Description</h2>
 <p>
 The NCBI Gene track for the $assemblyDate $em${organism}$noEm/$ncbiAsmId
 genome assembly is constructed from the gff file <b>${ncbiAsmId}_genomic.gff.gz</b>
 supplied with the genome assembly at the FTP location:<br>
-<a href='ftp://ftp.ncbi.nlm.nih.gov/genomes/all/$ftpDirPath/' target='_blank'>ftp://ftp.ncbi.nlm.nih.gov/genomes/all/$ftpDirPath/</a>
+<a href='https://ftp.ncbi.nlm.nih.gov/genomes/all/$ftpDirPath/' target='_blank'>https://ftp.ncbi.nlm.nih.gov/genomes/all/$ftpDirPath/</a>
 </p>
 
 _EOF_
    ;
 
 } else {
 
 print <<_EOF_
 <h2>Description</h2>
 <p>
 The Gene model track for the $assemblyDate $em${organism}$noEm/$ncbiAsmId
 genome assembly is constructed from the gff file <b>${ncbiAsmId}_genomic.gff.gz</b>
 supplied with the genome assembly at the FTP location:<br>
-<a href='ftp://ftp.ncbi.nlm.nih.gov/genomes/all/$ftpDirPath/' target='_blank'>ftp://ftp.ncbi.nlm.nih.gov/genomes/all/$ftpDirPath/</a>
+<a href='https://ftp.ncbi.nlm.nih.gov/genomes/all/$ftpDirPath/' target='_blank'>https://ftp.ncbi.nlm.nih.gov/genomes/all/$ftpDirPath/</a>
 </p>
 <p>
 The gene models were constructed by the submitter of the assembly to the
 NCBI assembly release system.
 </p>
 
 _EOF_
     ;
 }
 
 print <<_EOF_
 <h2>Track statistics summary</h2>
 <p>
 <b>Total genome size: </b>$totalBases<br>
 <b>Gene count: </b>$itemCount<br>