d258476e0cc734212538e8ab0a7509acb8b24aaa hiram Fri May 24 14:10:17 2024 -0700 remove cruft no redmine diff --git src/hg/utils/automation/refSeqOnGenBank.py src/hg/utils/automation/refSeqOnGenBank.py index 7689753..890e329 100755 --- src/hg/utils/automation/refSeqOnGenBank.py +++ src/hg/utils/automation/refSeqOnGenBank.py @@ -168,27 +168,20 @@ cd {gBuildPath} ./doTrackDb.bash """ doCmd.write(f"{outStr}") print(f"running:\n{runSh}") os.chmod(runSh, 0o775) stdOut, stdErr = subProcess([runSh]) print(f"output from run.sh:\n{stdOut}\n{stdErr}") sys.exit(0) +### this construct prevents main() from being parsed and syntax checked +### before the version_info < 3.6 safety check + if __name__ == "__main__": main() - -# head -3 /hive/data/genomes/asmHubs/refseqBuild/GCF/029/281/585/GCF_029281585.2_NHGRI_mGorGor1-v2.0_pri/trackData/chromAlias/GCF_029281585.2_NHGRI_mGorGor1-v2.0_pri.chromAlias.txt -# # refseq assembly genbank ncbi ucsc -# NC_011120.1 MT MT chrM -# NC_073224.2 chr1_pat_hsa1 CM055446.2 1 chr1 -# [hiram@hgwdev /cluster/home/hiram/kent/src/hg/makeDb/doc/asmHubs] head -3 /hive/data/genomes/asmHubs/refseqBuild/GCF/029/281/585/GCF_029281585.2_NHGRI_mGorGor1-v2.0_pri/trackData/chromAlias/GCF_029281585.2_NHGRI_mGorGor1-v2.0_pri.chromAlias.bed -# NC_011120.1 0 16412 NC_011120.1 MT MT chrM -# NC_073224.2 0 243847345 NC_073224.2 chr1_pat_hsa1 CM055446.2 1 chr1 -# NC_073227.2 0 215373162 NC_073227.2 chr3_pat_hsa4 CM055449.2 3 chr3 -#