0969409c52a6e1f50cc34ede97ee87fcd897200e hiram Mon Jun 17 13:18:27 2024 -0700 allow the same trick for getData functions genArk genome name without URL will work no redmine diff --git src/hg/hubApi/getData.c src/hg/hubApi/getData.c index 41177f2..078b240 100644 --- src/hg/hubApi/getData.c +++ src/hg/hubApi/getData.c @@ -950,30 +950,36 @@ apiErrAbort(err400, err400Msg, "can not find sequence for chrom=%s for endpoint '/getData/sequence?genome=%s;chrom=%s' give hubUrl='%s'", chrom, genome, chrom, hubUrl); } if (revComp) { reverseComplement(seq->dna, seq->size); jsonWriteBoolean(jw, "revComp", revComp); } jsonWriteString(jw, "dna", seq->dna); apiFinishOutput(0, NULL, jw); } void apiGetData(char *words[MAX_PATH_INFO]) /* 'getData' function, words[1] is the subCommand */ { char *hubUrl = cgiOptionalString("hubUrl"); +char *genome = cgiOptionalString("genome"); +/* allow a GCx genome specified without hubUrl for GenArk genomes */ +if (isEmpty(hubUrl) && isNotEmpty(genome) && isGenArk(genome)) + { + hubUrl = genArkHubTxt(genome); + } if (sameWord("track", words[1])) { char *extraArgs = verifyLegalArgs(argGetDataTrack); if (extraArgs) apiErrAbort(err400, err400Msg, "extraneous arguments found for function /getData/track '%s'", extraArgs); if (isNotEmpty(hubUrl)) getHubTrackData(hubUrl); else getTrackData(); } else if (sameWord("sequence", words[1])) { char *extraArgs = verifyLegalArgs(argGetDataSequence); if (extraArgs)