Commits for lrnassar

v467_preview2 to v467_base (2024-06-17 to 2024-06-24) v467

7cef739b740764fdd246db8182072142c1a6c011 Mon Jun 17 15:23:09 2024 -0700

• Chaning up some of the colors for the ENIGMA hub tracks as advised by Anna.
  • src/hg/makeDb/scripts/enigma/BRCAclinDomains.py - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/scripts/enigma/BRCAfunctionalAssays.py - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/scripts/enigma/BRCAmla.py - lines changed 3, context: html, text, full: html, text

72924c5113cc9889caa9ec788cb1fff7ddcee17f Mon Jun 17 16:37:50 2024 -0700

• Staging updated/new SpliceAI data which is now QA Ready. Refs #27141
  • src/hg/makeDb/doc/spliceAI.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/scripts/spliceAI/spliceAI.py - lines changed 74, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceAI.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/spliceAI.ra - lines changed 69, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 15, context: html, text, full: html, text

c3e1d16778b3af004003425907b23ae7cdb94844 Tue Jun 18 10:33:15 2024 -0700

• Removing carrots from name, feedback from Anna.
  • src/hg/makeDb/scripts/enigma/BRCAsplicing.py - lines changed 10, context: html, text, full: html, text

bec6d836cfb95960adc76c46e1a1640cb20b577a Thu Jun 20 16:24:09 2024 -0700

• Staging the changes nesting certain seldomly used assembly tracks into a new superTrack, refs #33474
  • src/hg/makeDb/trackDb/human/hg38/assemblyContainer.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/assemblyTracks.alpha.ra - lines changed 45, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/assemblyTracks.ra - lines changed 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 41, context: html, text, full: html, text

7b2e0a8c93a0fb8338f39bb3bab0eaf9c034e729 Thu Jun 20 16:49:42 2024 -0700

• Changing the name and pulling merged out of single-cell group to improve visibility. The other single cell tracks are being moved to the bottom and collapsed by default. Refs #33473
  • src/hg/makeDb/trackDb/human/hg38/singleCellMerged.alpha.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

fd016f52d1795d68684ede00d565bd900fa8b35c Fri Jun 21 11:18:57 2024 -0700

• Changing the name of this new superTrack from Max feedback, refs #33474
  • src/hg/makeDb/trackDb/human/hg38/assemblyTracks.alpha.ra - lines changed 1, context: html, text, full: html, text

09e499f358a77f7b5376d52008ea38644b3a48aa Fri Jun 21 17:32:32 2024 -0700

• Squashing stale pennantIcon, no RM.
  • src/hg/makeDb/trackDb/human/hg19/fantom5.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/fantom5.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/fantom5.ra - lines changed 1, context: html, text, full: html, text

62d71307f13d093ca22d7921681d72e6a037a718 Mon Jun 24 09:07:47 2024 -0700

• Moving the padding up to match the space on top of the GB image, refs #26325
  • src/hg/hgTracks/hgTracks.c - lines changed 9, context: html, text, full: html, text