d6207443ca5fe7eb379b9d8adc8ea8f53caccba8
hiram
  Thu Jun 6 09:06:11 2024 -0700
repeat modeler listings no longer available for VGP assemblies refs #29545

diff --git src/hg/makeDb/doc/asmHubs/mkHubIndex.pl src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
index 944e7f2..e08ae56 100755
--- src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
+++ src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
@@ -176,43 +176,45 @@
 assembly in the genome browser.
 </p>
 
 <h3>See also: <a href='asmStats.html'>assembly statistics</a>,&nbsp;<a href='trackData.html'>track statistics</a> &lt;== additional information for these assemblies.</h3><br>
 
 <h3>Cite reference: To reference these resources in publications, please credit:</h3>
 <p>
 Clawson, H., Lee, B.T., Raney, B.J. et al.
 "<b>GenArk: towards a million UCSC genome browsers</b>.<br><em>Genome Biol</em> 24, 217 (2023).
 <a href='https://doi.org/10.1186/s13059-023-03057-x' target=_blank>
 https://doi.org/10.1186/s13059-023-03057-x</a>
 </p>
 END
 
 if ($vgpIndex) {
+  if ( 1 == 0 ) {
   print <<"END";
 <h3>Listings:</h3>&nbsp;&nbsp;<b>(from RepeatModeler masking)</b>
 <p>
 <ul>
 <li><a href='modeler.families.urls.txt' target=_blank>families fasta.gz</a> list of URLs for the custom library created by the RepeatModeler run</li>
 <li><a href='modeler.2bit.urls.txt' target=_blank>assembly 2bit file list</a> of URLs as masked with the RepeatModeler + <b>TRF/simpleRepeats</b> with period of 12 or less</li>
 <li><a href='rmod.log.file.list.txt' target=_blank>the rmod.log files from each RepeatModeler run</a></li>
 <li><a href='default.twoBit.file.list.txt' target=_blank>default GenArk 2bit file list</a> of URLs as masked with the ordinary RepeatMasker + <b>TRF/simpleRepeats</b> with period of 12 or less</li>
 <li><a href='modeler.table.txt' target=_blank>this data table in tab-separated</a> file text format (including TBD not working yet, or in VGP collection but not on the alignment list)</li>
 </ul>
 </p>
 END
   }
+}
 
 print <<"END";
 <h3>Data resource links</h3>
 NOTE: <em>Click on the column headers to sort the table by that column</em><br>
 <br>
 The <em>common name and view in browser</em> will attach only that single assembly to
 the genome browser.<br>
 The <em>scientific name and data download</em> link provides access to the files for that one
 assembly hub.<br>
 END
 
   if ($vgpIndex) {
     print <<"END";
 The <em>class VGP link</em> provides access to the VGP GenomeArk page for that genome.<br>
 END