File Changes for angie

v467_preview to v467_preview2 (2024-06-10 to 2024-06-17) v467

• src/hg/hgPhyloPlace/vcfFromFasta.c
  • lines changed 38, context: html, text, full: html, text
    0c0fe3658fc96b44ea96c2b30f58194779569961 Mon Jun 10 18:17:25 2024 -0700
    Fix: was forgetting to explicitly set reference alleles when making VCF from nextclade output, resulting in way too many no-calls which made usher-sampled way too slow. Thanks @aviczhl2 for reporting the slowness.