01e5d8c767c5913b35cdc11e66ceef943dcb1906 galt Mon Jun 10 17:18:34 2024 -0700 note about h3africa added to bigDbsSnp.txt make doc diff --git src/hg/makeDb/doc/bigDbSnp.txt src/hg/makeDb/doc/bigDbSnp.txt index a3c20b8..fc6d262 100644 --- src/hg/makeDb/doc/bigDbSnp.txt +++ src/hg/makeDb/doc/bigDbSnp.txt @@ -971,15 +971,26 @@ rmdir split ln -s ../bigDbSnp.2021-09-30/split split rmdir splitProcessed ln -s ../bigDbSnp.2021-09-30/splitProcessed splitProcessed $HOME/kent/src/hg/utils/automation/doBigDbSnp.pl $topDir 155 $freqSourceOrder \ -buildDir=`pwd` -continue convert -stop install \ >& do.log & tail -f do.log *** All done ! (through the 'install' step) Elapsed time: 1028m23s *** Steps were performed in /hive/data/outside/dbSNP/155/bigDbSnp.2023-03-26 # checked errors and warnings, did not see anything concerning. ############################################################################# + +H3AFRICA is the dbsnp study with african variants that we want. + +https://h3africa.org/ + +v155 and v156 did not have H3AFRICA. + +V156 is still the latest release at this time (2024-06-10) + + +#############################################################################