d4f37ab805653c217758293128fe54557f4ec370
hiram
  Fri Jun 14 12:13:51 2024 -0700
adding a /list/genarkGenomes endpoint refs #23589

diff --git src/hg/hubApi/tests/makefile src/hg/hubApi/tests/makefile
index 327719b..6a7ddf9 100644
--- src/hg/hubApi/tests/makefile
+++ src/hg/hubApi/tests/makefile
@@ -21,31 +21,31 @@
 
 hgwdev::
 	SERVERNAME="https://api-test.gi.ucsc.edu" make test
 
 alpha::
 	SERVERNAME="https://genome-test.gi.ucsc.edu" make test
 
 beta::
 	SERVERNAME="https://apibeta.soe.ucsc.edu" make test
 
 all:: test0 listFunctions getFunctions listSchema getSequence wigData \
 	search supportedTypes errorTests notSupported bugReports
 
 listFunctions: list01 list02 list03 list04 list05 list06 list07 list08 list09 \
 	list10 list11 list12 list13 list14 list15 list16 list17 list18 list19 \
-	list20 list21 list22 list23 list24 list25
+	list20 list21 list22 list23 list24 list25 list26
 
 getFunctions: test8 test9 test10 test11 test12 test13 test14 \
 	test15 test16 test19 test21 test26 test27 test28 \
 	test29 test39 test40 test41 test42 test43 test44 test45 test46 test47 \
 	test48 test49 test50 test51 test52 test53 test54 test55 test56 test57 \
 	multiTrack01 multiTrack02 multiTrack03
 
 findGenome: findGenome01
 
 listSchema: schema01 schema02 schema03 schema04 schema05 schema06 schema07 \
 	schema08 schema09 schema10 schema11 schema12
 
 getSequence: getSeq01 getSeq02 getSeq03 getSeq04 getSeq05
 
 wigData: wig01 wig02 wig03 wig04 wig05 wig06 wig07 wig08 wig09 wig10 \
@@ -241,30 +241,42 @@
 	@./jsonConsumer.pl -serverName="${SERVERNAME}" -endpoint="/list/files" -genome="GCA_021951015.1" 2>&1 | egrep -v "${excludeLines}" | egrep -v "dateTime" | sed -e 's#https://.*/list#/list#;  s#/hubs/.*/hub#/hubs/hub#;' | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # testing /list/files?genome=ce2;maxItemsOutput=5
 list24: setOutput
 	@printf "### $@ '${SERVERNAME}/list/files?genome=ce2;maxItemsOutput=5'\n"
 	@./jsonConsumer.pl -maxItemsOutput=5  -serverName="${SERVERNAME}" -endpoint="/list/files" -genome="ce2" 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;  s#/hubs/.*/hub#/hubs/hub#;' | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # testing /list/files?genome=ce2;maxItemsOutput=5;format=text
 list25: setOutput
 	@printf "### $@ '${SERVERNAME}/list/files?genome=ce2;maxItemsOutput=5;format=text'\n"
 	@ curl -L "${SERVERNAME}/list/files?genome=ce2;maxItemsOutput=5;format=text" 2> /dev/null | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;  s#/hubs/.*/hub#/hubs/hub#;' | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
+# testing /list/genarkGenomes
+list26: setOutput
+	@printf "### $@ '${SERVERNAME}/list/genarkGenomes?maxItemsOutput=5'\n"
+	@./jsonConsumer.pl -maxItemsOutput=5  -serverName="${SERVERNAME}" -endpoint="/list/genarkGenomes" 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;  s#/hubs/.*/hub#/hubs/hub#;' | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
+# testing /list/genarkGenomes verify existence of genome GCA_000002765.3
+list27: setOutput
+	@printf "### $@ '${SERVERNAME}/list/genarkGenomes?genome=GCA_000002765.3;maxItemsOutput=5'\n"
+	@./jsonConsumer.pl -genome=GCA_000002765.3 -maxItemsOutput=5  -serverName="${SERVERNAME}" -endpoint="/list/genarkGenomes" 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/list#/list#;  s#/hubs/.*/hub#/hubs/hub#;' | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz
+
 ##########################   getData functions  #############################
 # testing /getData/track?genome=ce11&track=gold
 test8: setOutput
 	@./jsonConsumer.pl -serverName="${SERVERNAME}" -maxItemsOutput=123 -endpoint="/getData/track" -genome="ce11" -track="gold" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # testing /getData/track?genome=ce11&track=gold&chrom=chrM
 test9: setOutput
 	@./jsonConsumer.pl -serverName="${SERVERNAME}" -endpoint="/getData/track" -genome="ce11" -track="gold" -chrom="chrM" | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # testing /getData/track?genome=ce11&track=gold&chrom=chrI&start=1&end=1024
 test10: setOutput
 	@./jsonConsumer.pl -serverName="${SERVERNAME}" -endpoint="/getData/track" -genome="ce11" -track="gold" -chrom="chrI" -start=1 -end=1024 | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz