ce4c9616023304d8f391945196866c465c054fb5 hiram Wed Jun 12 20:17:42 2024 -0700 updating 17 for VGP alternate diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 52538a1..56a85b5 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -260,30 +260,31 @@ 8795 GCA_028389885.1_bPtePen1.alt birds 9315 GCA_028389975.1_mMacEug1.alt mammals 495146 GCA_028390025.1_aPseCor3.hap2 amphibians 495146 GCA_028390055.1_aPseCor3.hap1 amphibians 34844 GCA_028451465.1_mEreDor1.pri mammals 75485 GCA_028500815.1_bRisTri1.patW.cur.20221130 birds 34844 GCA_028500835.1_mEreDor1.alt mammals 75485 GCA_028501385.1_bRisTri1.mat.cur.20221130 birds 27606 GCA_028564815.1_mEubGla1.hap2 mammals 27606 GCA_028571275.1_mEubGla1.hap1 mammals 77598 GCA_028571665.1_mHetBru1.alt mammals 77598 GCA_028571685.1_mHetBru1.pri mammals 9226 GCA_028858555.1_bAraAra1.hap2 birds 9117 GCA_028858595.1_bGruAme1.pat birds 57412 GCA_028858625.1_bColStr4.hap2 birds +57412 GCA_028858625.2_bColStr4.1.hap2 birds 57412 GCA_028858725.1_bColStr4.hap1 birds 9226 GCA_028858755.1_bAraAra1.hap1 birds 9598 GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt primates 9598 GCA_028858805.2_NHGRI_mPanTro3-v2.0_alt primates 9590 GCA_028878085.2_NHGRI_mSymSyn1-v2.0_alt primates 9600 GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates 9600 GCA_028885525.2_NHGRI_mPonPyg2-v2.0_alt primates 9601 GCA_028885685.2_NHGRI_mPonAbe1-v2.0_alt primates 327740 GCA_029493135.1_aHylSar1.hap2 amphibians 2546036 GCA_029633845.1_fLamInc1.hap1 fish 27720 GCA_029633855.1_fHopMal1.hap1 fish 27720 GCA_029633875.1_fHopMal1.hap2 fish 460621 GCA_029931755.1_rEulEur1.hap2 reptiles 9785 GCA_030014295.1_mLoxAfr1.hap2 mammals 2290929 GCA_030014385.1_fTriRos1.hap1 fish @@ -294,30 +295,31 @@ 143292 GCA_030020945.1_mManPen7.hap2 mammals 29137 GCA_030020955.1_mDugDug1.hap2 mammals 575201 GCA_030028035.1_mHipAmp2.hap1 mammals 1983395 GCA_030028105.1_sMobBir1.hap1 sharks 29137 GCA_030035585.1_mDugDug1.hap1 mammals 261503 GCA_030035675.1_rRhiFlo1.hap2 reptiles 1983395 GCA_030035685.1_sMobBir1.hap2 sharks 261503 GCA_030035715.1_rRhiFlo1.hap1 reptiles 79690 GCA_030144785.1_sHypSab1.hap2 sharks 79690 GCA_030144855.1_sHypSab1.hap1 sharks 118683 GCA_030412085.1_rCycPin1.hap2 reptiles 118683 GCA_030412105.1_rCycPin1.hap1 reptiles 9978 GCA_030435715.1_mOchPri1.hap2 mammals 9666 GCA_030435785.1_mMusLut2.alt mammals 9361 GCA_030445055.1_mDasNov1.hap1 mammals +9361 GCA_030445055.2_mDasNov1.1.hap1 mammals 930266 GCA_030448965.1_fSalBra1.hap1 fish 36300 GCA_030449815.1_bPelCri1.alt birds 930266 GCA_030463535.1_fSalBra1.hap2 fish 36300 GCA_030463565.1_bPelCri1.pri birds 48891 GCA_030490855.1_bPoeAtr1.hap2 birds 3053191 GCA_030684295.1_sSteTig4.hap2 sharks 9823 GCA_030704935.1_ASM3070493v1 mammals 1192867 GCA_030820635.1_KIZ_Lrid_1.0 birds 9438 GCA_030848825.1_DD_mTadBra1_pri mammals 8496 GCA_030867065.1_rAllMis1 reptiles 283338 GCA_030867085.1_rLiaOli1.hap2 reptiles 283338 GCA_030867105.1_rLiaOli1.hap1 reptiles 30419 GCA_030867145.1_bOpiHoa1.hap1 birds 30419 GCA_030867165.1_bOpiHoa1.hap2 birds 37040 GCA_030936125.1_bGavSte3.hap1 birds @@ -348,73 +350,88 @@ 71010 GCA_035046495.1_rTilSci1.hap1 reptiles 71010 GCA_035046505.1_rTilSci1.hap2 reptiles 7740 GCA_035083965.1_klBraLanc5.hap2 invertebrate 7873 GCA_035084065.1_sHydCol1.hap1 sharks 212740 GCA_035084135.1_sHepPer1.hap2 sharks 212740 GCA_035084215.1_sHepPer1.hap1 sharks 7873 GCA_035084275.1_sHydCol1.hap2 sharks 51853 GCA_035125265.1_rCanAsp1.hap1 reptiles 51853 GCA_035149785.1_rCanAsp1.hap2 reptiles 7740 GCA_035149815.1_klBraLanc5.hap1 invertebrate 57060 GCA_035609135.1_aEleCoq1.hap2 amphibians 57060 GCA_035609145.1_aEleCoq1.hap1 amphibians 1914991 GCA_035770615.1_bMelMel2.pri birds 187106 GCA_036010745.1_bCalNic1.hap2 birds 8932 GCA_036010775.1_bColLiv1.mat birds +8932 GCA_036010775.2_bColLiv1.mat.v2 birds 3111550 GCA_036010785.1_bAmmMar1.pri birds 187106 GCA_036013445.1_bCalNic1.hap1 birds 8932 GCA_036013475.1_bColLiv1.pat.W birds 8932 GCA_036013475.2_bColLiv1.pat.W.v2 birds 472823 GCA_036169615.1_bHelExo1.hap1 birds 472823 GCA_036172335.1_bHelExo1.hap2 birds 191477 GCA_036172605.1_aPelFus1.pri amphibians 233781 GCA_036172795.1_aPelIbe1.pri amphibians 415032 GCA_036250125.1_bDixPip1.hap1 birds 415032 GCA_036250135.1_bDixPip1.hap2 birds 9838 GCA_036321535.1_mCamDro1.pat mammals 9838 GCA_036321565.1_mCamDro1.hap2 mammals 7924 GCA_036365475.1_fAmiCal2.hap2 fish 7792 GCA_036365495.1_sHetFra1.hap2 sharks 7792 GCA_036365525.1_sHetFra1.hap1 sharks 7924 GCA_036373705.1_fAmiCal2.hap1 fish 9725 GCA_036417435.1_mIniGeo1.hap1 mammals 9725 GCA_036417475.1_mIniGeo1.hap2 mammals +8790 GCA_036417515.1_bDroNov1.hap2 birds 187382 GCA_036417535.1_bChlMac1.mat birds 48849 GCA_036417665.1_bPasDom1.hap1 birds 2696672 GCA_036417845.1_bAptMan1.hap1 birds 48849 GCA_036417895.1_bPasDom1.hap2 birds 2696672 GCA_036417975.1_bAptMan1.hap2 birds 187382 GCA_036418225.1_bChlMac1.pat birds 9796 GCA_036418255.1_mEquCab1.mat mammals 9796 GCA_036426135.1_mEquCab1.pat mammals +1570318 GCA_036850655.1_bMerOct1.hap2 birds 59482 GCA_036850765.1_mSacBil1_pri_phased_curated mammals 249018 GCA_036850995.1_mSacLep1_pri_phased_curated mammals 1570318 GCA_036873955.1_bMerOct1.hap1 birds 1343680 GCA_036971175.1_sNarBan1.hap2 sharks +1343680 GCA_036971445.1_sNarBan1.hap1 sharks 372321 GCA_036971685.1_bPatFas1.hap2 birds 10058 GCA_037038515.1_mMicPen1.hap1 mammals 249017 GCA_037038545.1_mRhyNas2.hap1 mammals +249017 GCA_037038555.1_mRhyNas2.hap2 mammals +54267 GCA_037038625.1_fFunDia1.hap2 fish 54267 GCA_037039145.1_fFunDia1.hap1 fish +10058 GCA_037039175.1_mMicPen1.hap2 mammals 1552295 GCA_037157525.1_mMolAlv2.hap1 mammals +1552295 GCA_037176705.1_mMolAlv2.hap2 mammals 38937 GCA_037176765.1_rAnoSag1.mat reptiles +38937 GCA_037176775.1_rAnoSag1.pat reptiles 43566 GCA_037306005.1_aRhiDor1.hap1 amphibians +43566 GCA_037306015.1_aRhiDor1.hap2 amphibians +43583 GCA_037950955.1_bSarPap1.hap2 birds 43583 GCA_037962945.1_bSarPap1.hap1 birds +28792 GCA_038021265.1_fCypVen1.hap1 fish 28792 GCA_038024135.1_fCypVen1.hap2 fish 3061075 GCA_038048845.1_aMixFle1.hap1 amphibians +3061075 GCA_038048865.1_aMixFle1.hap2 amphibians 8014 GCA_038355195.1_fOsmMor3.pri fish 27634 GCA_038363095.1_mArtLit.hap1 mammals 51014 GCA_038363145.1_mArtInt1.hap1 mammals +51014 GCA_038363225.1_mArtInt1.hap2 mammals +288555 GCA_038501915.1_aXenPet1.maternal.cur amphibians 288555 GCA_038501925.1_aXenPet1.paternal.cur amphibians 8154 GCA_900246225.5_fAstCal1.3 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900324465.3_fAnaTes1.3 fish 205130 GCA_900324485.3_fMasArm1.3 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 210632 GCA_900634625.2_fParRan2.2 fish 441366 GCA_900634775.1_fGouWil2.1 fish 441366 GCA_900634775.2_fGouWil2.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 158456 GCA_900651605.2_fBetSpl5.4_alternate_haplotype fish