4ac9486a77f0ed4e87de2e946f29e203b354398b markd Thu Jun 13 13:56:46 2024 -0700 added chainToBigChain command diff --git src/hg/lib/makefile src/hg/lib/makefile index 9ca86e2..1dd43e0 100644 --- src/hg/lib/makefile +++ src/hg/lib/makefile @@ -1,24 +1,24 @@ kentSrc = ../.. include ../../inc/localEnvironment.mk include ../../inc/common.mk XINC = -I$(MYSQLINC) O=adjacency.o affyPairs.o agpFrag.o agpGap.o alignSeqSizes.o altGraphX.o \ asmAlias.o asmEquivalent.o asmSummary.o autoUpgrade.o axtInfo.o \ barChartBed.o barChartCategory.o barChartUi.o bed.o bed12Source.o \ - bedDetail.o bigBedFind.o bigBedLabel.o bigChain.o bigDbSnp.o bigGenePred.o \ + bedDetail.o bigBedFind.o bigBedLabel.o bigChain.o bigDbSnp.o bigGenePred.o bigLink.o \ bigPsl.o blastTab.o borf.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o \ cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgiApoptosis.o chainCart.o chainDb.o chainLink.o chainNet.o \ chainNetDbLoad.o chromAlias.o chromBins.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o \ chromKeeper.o clonePos.o cpgIsland.o ctgPos.o customAdjacency.o customComposite.o customFactory.o \ customPp.o customTrack.o cv.o cytoBand.o dbDb.o decoration.o decoratorUi.o defaultDb.o dnaMotifSql.o dupTrack.o \ encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeExp.o encode/encodeHapMapAlleleFreq.o \ encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfoCustom.o encode/encodeRna.o \ encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/peptideMapping.o \ encode/wgEncodeGencodeAnnotationRemark.o encode/wgEncodeGencodeAttrs.o encode/wgEncodeGencodeEntrezGene.o \ encode/wgEncodeGencodeExonSupport.o encode/wgEncodeGencodeGeneSource.o encode/wgEncodeGencodeGeneSymbol.o encode/wgEncodeGencodePdb.o \ encode/wgEncodeGencodePubMed.o encode/wgEncodeGencodeRefSeq.o encode/wgEncodeGencodeTag.o \ encode/wgEncodeGencodeTranscriptSource.o encode/wgEncodeGencodeTranscriptSupport.o \ encode/wgEncodeGencodeTranscriptionSupportLevel.o encode/wgEncodeGencodeUniProt.o encode3/encode3Valid.o \ estOrientInfo.o expData.o exportedDataHubs.o expRecord.o facetField.o facetedTable.o featureBits.o findKGAlias.o \ findKGProtAlias.o gbSeq.o gbExtFile.o gcPercent.o genark.o genbank.o genbankBlackList.o gencodeTracksCommon.o gencodeAttrs.o gencodeToRefSeq.o geneGraph.o \