4ac9486a77f0ed4e87de2e946f29e203b354398b
markd
  Thu Jun 13 13:56:46 2024 -0700
added chainToBigChain command

diff --git src/hg/pslToChain/tests/makefile src/hg/pslToChain/tests/makefile
index 7722421..0f0e224 100644
--- src/hg/pslToChain/tests/makefile
+++ src/hg/pslToChain/tests/makefile
@@ -1,28 +1,33 @@
 kentSrc = ../../..
 include ../../../inc/common.mk
 
 pslToChain=${DESTBINDIR}/pslToChain
 chainToPsl=${DESTBINDIR}/chainToPsl
 
-test: example1 example2
+test: example1 example2 example3
 	${MAKE} clean
 
 example1: mkdirs
+example1: mkdirs
 	${pslToChain} input/ucscGenes.psl.gz output/ucscGenes.chain
 	zcat input/ucscGenes.psl.gz | cut -f 10- > output/ucscGenes.shortPsl 
 	${chainToPsl} output/ucscGenes.chain /cluster/data/hg38/chrom.sizes \
 		input/ucscGenes.sizes.gz  /cluster/data/hg38/hg38.2bit  \
 		input/ucscGenes.fa.gz stdout 2> /dev/null \
 		| cut -f 10- > output/roundTrip.shortPsl  
-	diff output/roundTrip.shortPsl output/ucscGenes.shortPsl
+	diff output/ucscGenes.shortPsl output/roundTrip.shortPsl
 
 example2: mkdirs
-	-${pslToChain} input/mtor.psl.gz output/mtor.chain 2> output/error || true
-	diff output/error expected/error
+	-${pslToChain} input/mtor.psl output/mtor.chain 2> output/error || true
+	diff expected/error output/error
+
+example3: mkdirs
+	-${pslToChain} -fixStrand input/mtor.psl output/$@.chain
+	diff expected/$@.chain output/$@.chain
 
 mkdirs:
 	@${MKDIR} output
 
 
 clean::
 	@rm -rf output