53d47095c2c11bd94fd28679078d2382d9c42def
jbirgmei
  Wed Jun 26 05:45:25 2024 -0700
Adding pubtator dbsnp track

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 2749518..253bfb6 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -214,30 +214,42 @@
 
         track avada
         shortLabel Avada Variants
         longLabel Avada Variants extracted from full text publications
         visibility dense
         type bigBed 9 +
         bigDataUrl /gbdb/$D/bbi/avada.bb
         noScoreFilter on
         exonNumbers off
         #itemRgb on
         dataVersion release 1
         parent varsInPubs pack
         urls pmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" doi="https://doi.org/$$" ensId="http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=$$" entrezs="https://www.ncbi.nlm.nih.gov/gene/$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$"
         mouseOverField _mouseOver
 
+        track pubtator
+        shortLabel PubTator rsIDs
+        longLabel dbSNP Variants extracted by PubTator3
+        visibility dense
+        type bigBed 9 +
+        bigDataUrl /gbdb/$D/pubs2/pubtatorDbSnp.bb
+        noScoreFilter on
+        exonNumbers off
+        itemRgb on
+        parent varsInPubs pack
+        mouseOver Found in ${numPubmedIds} PubMed articles (click for details)
+
 track caseControl
 compositeTrack on
 shortLabel Case Control
 longLabel Case Control Consortium
 group phenDis
 visibility hide
 type chromGraph
 minMax 0,15
 linesAt 5,10
 
     track cccTrendPvalBd
     parent caseControl
     shortLabel CCC Bipolar Dis
     longLabel Case Control Consortium Bipolar Disorder Trend -log10 P-value
     priority 1