File Changes for hiram

v468_preview to v468_preview2 (2024-07-01 to 2024-07-08) v468

• src/hg/htdocs/goldenPath/help/api.html
  • lines changed 3, context: html, text, full: html, text
    2ceb57ce1aad2e33d2521440fca156b5280f59a2 Fri Jul 5 11:30:15 2024 -0700
    clean up the revComp example refs #34045
  • lines changed 26, context: html, text, full: html, text
    720de849b76a5a3d95e66050d5a2c2683d60351a Fri Jul 5 12:58:50 2024 -0700
    adding list/genarkGenomes endpoint and examples refs #34045
  • lines changed 12, context: html, text, full: html, text
    faf3198f3682f6d9a999bc62908520fa2455ce0d Fri Jul 5 13:21:26 2024 -0700
    list/genarkGenomes is no out public yet refs #34045
• src/hg/hubApi/apiUtils.c
  • lines changed 24, context: html, text, full: html, text
    ba87d8471c9c78f15412ccad2aaba9b46d1af38e Tue Jul 2 16:14:47 2024 -0700
    eliminte the dependency upon specific genArk genome names, use the genark table for questions about existence, refs #32596
• src/hg/hubApi/dataApi.h
  • lines changed 12, context: html, text, full: html, text
    ba87d8471c9c78f15412ccad2aaba9b46d1af38e Tue Jul 2 16:14:47 2024 -0700
    eliminte the dependency upon specific genArk genome names, use the genark table for questions about existence, refs #32596
• src/hg/hubApi/genomePriority.py
  • lines changed 174, context: html, text, full: html, text
    aff75303759349db45579315630cb17e9370f86f Fri Jul 5 16:07:27 2024 -0700
    now with assembly exist signal and including all RefSeq potential assemblies refs #32897
• src/hg/hubApi/getData.c
  • lines changed 4, context: html, text, full: html, text
    ba87d8471c9c78f15412ccad2aaba9b46d1af38e Tue Jul 2 16:14:47 2024 -0700
    eliminte the dependency upon specific genArk genome names, use the genark table for questions about existence, refs #32596
• src/hg/hubApi/list.c
  • lines changed 12, context: html, text, full: html, text
    ba87d8471c9c78f15412ccad2aaba9b46d1af38e Tue Jul 2 16:14:47 2024 -0700
    eliminte the dependency upon specific genArk genome names, use the genark table for questions about existence, refs #32596
• src/hg/hubApi/tests/makefile
  • lines changed 2, context: html, text, full: html, text
    ba87d8471c9c78f15412ccad2aaba9b46d1af38e Tue Jul 2 16:14:47 2024 -0700
    eliminte the dependency upon specific genArk genome names, use the genark table for questions about existence, refs #32596
• src/hg/inc/genark.h
  • lines changed 14, context: html, text, full: html, text
    ba87d8471c9c78f15412ccad2aaba9b46d1af38e Tue Jul 2 16:14:47 2024 -0700
    eliminte the dependency upon specific genArk genome names, use the genark table for questions about existence, refs #32596
• src/hg/lib/cart.c
  • lines changed 3, context: html, text, full: html, text
    6c2d7c1b83c8d6155ea77aa76bae0d06c3720ceb Wed Jul 3 09:34:03 2024 -0700
    eliminte the dependency upon specific genArk genome names, use the genark table for questions about existence, refs #32596
• src/hg/lib/genark.c
  • lines changed 38, context: html, text, full: html, text
    ba87d8471c9c78f15412ccad2aaba9b46d1af38e Tue Jul 2 16:14:47 2024 -0700
    eliminte the dependency upon specific genArk genome names, use the genark table for questions about existence, refs #32596
• src/hg/lib/genomePriority.h
  • lines changed 86, context: html, text, full: html, text
    634e8dd27316b349bb645e28095654c94c61c0f9 Fri Jul 5 13:33:17 2024 -0700
    incorrect location for this file refs #32897
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 109, context: html, text, full: html, text
    7d22b62315f1138f347ff4e720f67658ca8426d3 Mon Jul 1 15:27:30 2024 -0700
    correct clade notations refs #29545
  • lines changed 3, context: html, text, full: html, text
    d217e9d5f944cdd45286c32aad912844d0f285fe Thu Jul 4 19:42:31 2024 -0700
    adding 2 per user request refs #29545
  • lines changed 41, context: html, text, full: html, text
    dbf63c8017a7942b2cadbafa74b4c684af36db26 Fri Jul 5 09:19:43 2024 -0700
    GenArk RefSeq update refs #29545
• src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    d217e9d5f944cdd45286c32aad912844d0f285fe Thu Jul 4 19:42:31 2024 -0700
    adding 2 per user request refs #29545
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 5, context: html, text, full: html, text
    dbf63c8017a7942b2cadbafa74b4c684af36db26 Fri Jul 5 09:19:43 2024 -0700
    GenArk RefSeq update refs #29545
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    dbf63c8017a7942b2cadbafa74b4c684af36db26 Fri Jul 5 09:19:43 2024 -0700
    GenArk RefSeq update refs #29545
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
  • lines changed 15, context: html, text, full: html, text
    dbf63c8017a7942b2cadbafa74b4c684af36db26 Fri Jul 5 09:19:43 2024 -0700
    GenArk RefSeq update refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 13, context: html, text, full: html, text
    dbf63c8017a7942b2cadbafa74b4c684af36db26 Fri Jul 5 09:19:43 2024 -0700
    GenArk RefSeq update refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    dbf63c8017a7942b2cadbafa74b4c684af36db26 Fri Jul 5 09:19:43 2024 -0700
    GenArk RefSeq update refs #29545
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    dbf63c8017a7942b2cadbafa74b4c684af36db26 Fri Jul 5 09:19:43 2024 -0700
    GenArk RefSeq update refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    dbf63c8017a7942b2cadbafa74b4c684af36db26 Fri Jul 5 09:19:43 2024 -0700
    GenArk RefSeq update refs #29545
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    dbf63c8017a7942b2cadbafa74b4c684af36db26 Fri Jul 5 09:19:43 2024 -0700
    GenArk RefSeq update refs #29545