459e2288153379fa730eb1b648145bfb7bbc8dc2
braney
  Tue Jul 16 17:52:06 2024 -0700
add rewrite rule for OMiM tracks to consolidate them in super track

diff --git src/hg/makeDb/trackDb/human/omim.alpha.ra src/hg/makeDb/trackDb/human/omim.alpha.ra
index 477f7e6..264fc41 100644
--- src/hg/makeDb/trackDb/human/omim.alpha.ra
+++ src/hg/makeDb/trackDb/human/omim.alpha.ra
@@ -1,83 +1,84 @@
 track omimContainer
 superTrack on show
 shortLabel OMIM
 longLabel Online Mendelian Inheritance in Man
 group phenDis
 priority 1
+cartVersion 5
 
     track omimLocation
     priority 3
     shortLabel OMIM Cyto Loci
     longLabel OMIM Cytogenetic Loci Phenotypes - Gene Unknown
     visibility hide
     color 0, 80, 0
     type bed 4
     hgsid on
     url http://www.omim.org/entry/
     tableBrowser noGenome
     noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org
     parent omimContainer
 
     track omimGene2
     priority 2
     shortLabel OMIM Genes
     longLabel OMIM Gene Phenotypes - Dark Green Can Be Disease-causing
     visibility dense
     color 0, 80, 0
     type bed 4
     hgsid on
     url http://www.omim.org/entry/
     tableBrowser noGenome omimGeneMap omimGeneMap2 omimPhenotype omimGeneSymbol omim2gene
     noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org
     parent omimContainer
 
     track omimAvSnp
     priority 1
     shortLabel OMIM Alleles
     longLabel OMIM Allelic Variant Phenotypes
     visibility hide
     color 0, 80, 0
     type bed 4
     hgsid on
     url http://www.omim.org/entry/
     tableBrowser noGenome omimAv omimAvRepl
     noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org
     parent omimContainer
 
 searchName omimAvSnpAcc
 searchTable omimAvSnp
 searchMethod exact
 searchType bed
 shortCircuit 1
 semiShortCircuit 1
 termRegex ([0-9]{6})\.([0-9]{4})
 searchPriority 10
 padding 50
 
 searchName omimGene2Acc
 searchTable omimGene2
 searchMethod exact
 searchType bed
 shortCircuit 1
 semiShortCircuit 1
 termRegex ([0-9]{6})
 searchPriority 10
 #release beta,public
 
 #searchName omimGene2AccBb
 #searchTable omimGene2bb
 #searchMethod exact
 #searchType bigBed
 #shortCircuit 1
 #semiShortCircuit 1
 #termRegex ([0-9]{6})
 #searchPriority 10
 #release alpha
 
 searchName omimGeneLocAcc
 searchTable omimLocation
 searchMethod exact
 searchType bed
 semiShortCircuit 1
 termRegex ([0-9]{6})
 searchPriority 10