9d98499c2484b4bb31788c4e20d9c145c2a6ae92
hiram
  Thu Jul 18 14:10:32 2024 -0700
eliminate the useless "Organism name:" from the common name string refs #33720

diff --git src/hg/makeDb/doc/asmHubs/commonNames.pl src/hg/makeDb/doc/asmHubs/commonNames.pl
index 6b07122..21cb25e 100755
--- src/hg/makeDb/doc/asmHubs/commonNames.pl
+++ src/hg/makeDb/doc/asmHubs/commonNames.pl
@@ -93,30 +93,31 @@
      $extraStrings = "${cultivar}$asmType $yearDate";
   }
   if ( length("${extraStrings}") < 1) {
      $extraStrings = "$asmType $yearDate";
      $extraStrings =~ s/^ +//;
   }
   my $orgName = `grep -i -m 1 "Organism name:" "${asmRpt}" | tr -d "
"`;
   $orgName =~ s/.*\(//;
   $orgName =~ s/\)//g;
   $orgName =~ s/\(//g;
   $orgName =~ s/\[//g;
   $orgName =~ s/\]//g;
   $orgName =~ s/\?/ /g;
   $orgName =~ s/\+//g;
   $orgName =~ s/\*//g;
+  $orgName =~ s/.*ism name:\s+//i;
   chomp $orgName;
   if ($orgName =~ m/kinetoplastids|firmicutes|proteobacteria|high G|enterobacteria|agent of/) {
     $orgName = $sciName;
   } elsif ($orgName =~ m/bugs|crustaceans|nematodes|flatworm|ascomycete|basidiomycete|budding|microsporidian|smut|fungi|eukaryotes|flies|beetles|mosquitos|bees|moths|sponges|^mites|ticks|^comb|jellies|jellyfishes|chitons|bivalves|bony fishes|birds|eudicots|snakes|bats/) {
     my ($order, undef) = split('\s', $orgName, 2);
     $order = "budding yeast" if ($order =~ m/budding/);
     $order = "smut fungi" if ($order =~ m/smut/);
     $order = "bony fish" if ($order =~ m/bony/);
     $order = "ascomycetes" if ($order =~ m/ascomycete/);
     $order = "eudicot" if ($order =~ m/eudicots/);
     $order = "bird" if ($order =~ m/birds/);
     $order = "snake" if ($order =~ m/snakes/);
     $order = "crustacean" if ($order =~ m/crustaceans/);
     $order = "mosquito" if ($order =~ m/mosquitos/);
     $order = "mite/tick" if ($order =~ m/mites/);