2390b3f3a5623be111160d4f96fc6ea4c197ca4a hiram Fri Jul 19 11:12:57 2024 -0700 assemblyList table definition for gateway search and findGenome API functions refs #33720 diff --git src/hg/lib/assemblyList.as src/hg/lib/assemblyList.as new file mode 100644 index 0000000..f51dd58 --- /dev/null +++ src/hg/lib/assemblyList.as @@ -0,0 +1,13 @@ +table assemblyList +"listing all UCSC genomes, and all NCBI assemblies, with search priority, and status if browser available or can be requested + ( + string name; "UCSC genome: dbDb name or GenArk/NCBI accession" + uint priority; "assigned search priority" + string commonName; "a common name" + string scientificName; "binomial scientific name" + uint taxId; "Entrez taxon ID: www.ncbi.nlm.nih.gov/taxonomy/?term=xxx" + string clade; "approximate clade: primates mammals birds fish ... etc ..." + string description; "other description text" + ubyte browserExists; "1 == this assembly is available at UCSC, 0 == can be requested" + string hubUrl; "path name to hub.txt: GCF/000/001/405/GCF_000001405.39/hub.txt" + )