The UCSC Genome Browser is getting ready to update hg19's UCSC Genes dataset for the first time since 2013. In this update, the UCSC Genes track will now use GENCODE v45 gene models lifted to hg19 and replace the old UCSC transcript IDs with the official GENCODE IDs.
-The anticipated released -date for this update is July 31, 2024.
+The anticipated release date for this update is July 31, 2024.As an example of what to expect, here are some GENCODE IDs that will replace the UCSC IDs in the update:
oldId newId uc003qfo.3 ENST00000341911.10_8 uc003jsk.2 ENST00000462279.5_3 uc003umk.1 ENST00000318238.9_6 uc003gzi.3 ENST00000682860.1_2 uc011dpu.2 ENST00000375023.3_6 uc021raj.2 ENST00000258149.11_6 uc002fxp.3 ENST00000341657.9_12 uc010xhp.1 ENST00000429344.7_6 uc003zze.3 ENST00000242285.11_9
-For each transcript ID, the _# portion is part of the official hg19 backmap ID, so they are not -confused with the gene/transcript they are derived from in hg38. Between hg38 and hg19, the two IDs -are not always in the same sequence and may not be a one-to-one mapping. +For each transcript ID, the _# portion is part of the +official hg19 backmap ID, so they are not confused with the gene/transcript they +are derived from in hg38. Between hg38 and hg19, the two IDs are not always in the same sequence and +may not be a one-to-one mapping.
With this update, we will also be freezing the previous 2013 knownGene release in a separate archive track. Once new GENCODE versions are available, the previous track will then be added to the archive for future reproducibility. More information about the knownGene archive will be available once the update is released.
We are pleased to announce new GENCODE Gene annotation tracks, which correspond to Ensembl 112, for three assemblies: hg19/GRCh37,