a26e6bfa1bc310a809138e7c39bdcf5ea29a79ef
lrnassar
  Tue Jul 16 17:13:07 2024 -0700
Nesting OMIM into a single superTrack, refs #25682

diff --git src/hg/makeDb/trackDb/human/omim.ra src/hg/makeDb/trackDb/human/omim.ra
new file mode 100644
index 0000000..2f53212
--- /dev/null
+++ src/hg/makeDb/trackDb/human/omim.ra
@@ -0,0 +1,73 @@
+track omimLocation
+shortLabel OMIM Cyto Loci
+longLabel OMIM Cytogenetic Loci Phenotypes - Gene Unknown
+group phenDis
+visibility hide
+color 0, 80, 0
+type bed 4
+hgsid on
+url http://www.omim.org/entry/
+tableBrowser noGenome
+noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org
+
+track omimGene2
+shortLabel OMIM Genes
+longLabel OMIM Gene Phenotypes - Dark Green Can Be Disease-causing
+group phenDis
+visibility dense
+color 0, 80, 0
+type bed 4
+hgsid on
+url http://www.omim.org/entry/
+tableBrowser noGenome omimGeneMap omimGeneMap2 omimPhenotype omimGeneSymbol omim2gene
+noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org
+
+track omimAvSnp
+shortLabel OMIM Alleles
+longLabel OMIM Allelic Variant Phenotypes
+group phenDis
+visibility hide
+color 0, 80, 0
+type bed 4
+hgsid on
+url http://www.omim.org/entry/
+tableBrowser noGenome omimAv omimAvRepl
+noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org
+
+searchName omimAvSnpAcc
+searchTable omimAvSnp
+searchMethod exact
+searchType bed
+shortCircuit 1
+semiShortCircuit 1
+termRegex ([0-9]{6})\.([0-9]{4})
+searchPriority 10
+padding 50
+
+searchName omimGene2Acc
+searchTable omimGene2
+searchMethod exact
+searchType bed
+shortCircuit 1
+semiShortCircuit 1
+termRegex ([0-9]{6})
+searchPriority 10
+#release beta,public
+
+#searchName omimGene2AccBb
+#searchTable omimGene2bb
+#searchMethod exact
+#searchType bigBed
+#shortCircuit 1
+#semiShortCircuit 1
+#termRegex ([0-9]{6})
+#searchPriority 10
+#release alpha
+
+searchName omimGeneLocAcc
+searchTable omimLocation
+searchMethod exact
+searchType bed
+semiShortCircuit 1
+termRegex ([0-9]{6})
+searchPriority 10